# List of top-scoring protein chains for t06-w0.5-1-n_notor-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2g7uA	257	3.68e-22		
1tf1A	198	1.40e-21	d.110.2.2	106826
2ia2A	265	1.64e-21		
1mkmA	249	3.88e-21	a.4.5.33,d.110.2.2	79242,79243
1yspA	181	1.74e-20		
1ysqA	193	3.32e-20		
2o99A	182	8.11e-20	d.110.2.2	138952
2o0yA	260	1.44e-19		
3bjnA	165	1.70e-19		
2qq9A	226	0.3025		
2uzhA	165	1.401		
1gx1A	160	3.382	d.79.5.1	70675
1yr0A	175	3.383	d.108.1.1	123905
1t0aA	159	4.480	d.79.5.1	112192
3claA	213	8.621	c.43.1.1	32610
1k6kA	143	9.288	a.174.1.1	77274
3b6nA	187	9.397		
1iv3A	152	11.24	d.79.5.1	76828
2basA	431	11.58	c.1.33.1,d.110.6.2	128244,128245
1ub0A	258	12.41	c.72.1.2	88394
2qs8A	418	14.74		
2d4wA	504	15.48		
2depA	356	15.49		
1s7kA	182	16.94	d.108.1.1	118878
2qmoA	220	17.05		
2uv0E	175	17.55		
2eo0A	147	18.61		
2j8mA	172	19.06		
2p35A	259	19.37		
1ii5A	233	23.17	c.94.1.1	62412
2r8cA	426	28.86		
1kllA	130	30.52	d.32.1.2	72720
1v2dA	381	32.19	c.67.1.1	108281
1np3A	338	33.61	a.100.1.2,c.2.1.6	85946,85947
2zf5O	497	34.12		
3ciwA	348	34.96		
1z41A	338	36.41	c.1.4.1	124421
2idlA	117	38.80		
2ha8A	184	39.92		
2odiA	238	43.53		
1bu6O	501	49.05	c.55.1.4,c.55.1.4	33499,33500
2v8fA	140	55.67		
2cxaA	256	55.97	d.108.1.6	130993
1cttA	294	56.66	c.97.1.1,c.97.1.1	36022,36023
1y6vA	449	57.57	c.76.1.1	122674
2e0qA	104	57.99		
1b5pA	385	58.36	c.67.1.1	90403
2cy2A	174	58.43	d.108.1.1	131016
1u4bA	580	60.26	c.55.3.5,e.8.1.1	107664,107665
1mpyA	307	61.53	d.32.1.3,d.32.1.3	38508,38509
2ge3A	170	62.47	d.108.1.1	135044
2obfA	289	66.21		
2ft0A	235	66.76		
1o4sA	389	67.92	c.67.1.1	86620
1zzoA	136	69.04	c.47.1.10	125913
1dpeA	507	73.40	c.94.1.1	35799
1jx4A	352	74.06	d.240.1.1,e.8.1.7	90378,90379
2i9dA	217	74.09		
2fb2A	340	76.41		
2p3rA	510	78.86	c.55.1.4,c.55.1.4	139471,139472
1a19A	90	79.10	c.9.1.1	30831
1mc0A	368	80.16	d.110.2.1,d.110.2.1	78937,78938
1nlfA	279	80.43	c.37.1.11	85850
3bgvA	313	80.48		
2pyyA	228	85.03		
2qcfA	260	85.17		
1twuA	139	85.57	d.32.1.8	107413
2ozhA	142	88.09