# List of top-scoring protein chains for t06-w0.5-1-bys-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2g7uA	257	5.30e-22		
2ia2A	265	1.84e-21		
1mkmA	249	3.50e-21	a.4.5.33,d.110.2.2	79242,79243
1tf1A	198	3.91e-21	d.110.2.2	106826
1yspA	181	2.24e-20		
1ysqA	193	1.10e-19		
2o99A	182	2.38e-19	d.110.2.2	138952
2o0yA	260	4.57e-19		
3bjnA	165	5.40e-19		
2qq9A	226	0.2168		
2uzhA	165	1.450		
1gx1A	160	3.360	d.79.5.1	70675
1t0aA	159	4.354	d.79.5.1	112192
2depA	356	6.505		
3b6nA	187	7.695		
3claA	213	7.711	c.43.1.1	32610
1yr0A	175	8.653	d.108.1.1	123905
1iv3A	152	10.06	d.79.5.1	76828
1jx4A	352	11.08	d.240.1.1,e.8.1.7	90378,90379
2basA	431	11.54	c.1.33.1,d.110.6.2	128244,128245
1np3A	338	12.50	a.100.1.2,c.2.1.6	85946,85947
1ub0A	258	12.86	c.72.1.2	88394
2d4wA	504	15.93		
1t94A	459	16.34	d.240.1.1,e.8.1.7	106701,106702
1ii5A	233	16.58	c.94.1.1	62412
2j8mA	172	18.64		
1k6kA	143	20.15	a.174.1.1	77274
2zf5O	497	20.44		
2uv0E	175	20.71		
2qmoA	220	21.43		
2p35A	259	23.58		
2qs8A	418	25.21		
2idlA	117	27.27		
1v2dA	381	28.37	c.67.1.1	108281
1b5pA	385	30.41	c.67.1.1	90403
1nlfA	279	33.77	c.37.1.11	85850
2eo0A	147	34.12		
2ha8A	184	34.72		
3ciwA	348	35.97		
1kllA	130	38.99	d.32.1.2	72720
1o4sA	389	41.65	c.67.1.1	86620
1y4jA	284	42.73	d.169.1.7	122620
2odiA	238	45.29		
1r59O	505	49.58	c.55.1.4,c.55.1.4	111697,111698
2cxaA	256	50.16	d.108.1.6	130993
1hslA	238	54.30	c.94.1.1	35804
1zzoA	136	55.31	c.47.1.10	125913
3bgvA	313	57.83		
2ge3A	170	58.61	d.108.1.1	135044
2q88A	257	60.33		
1bu6O	501	62.37	c.55.1.4,c.55.1.4	33499,33500
2i9dA	217	63.81		
1cttA	294	67.97	c.97.1.1,c.97.1.1	36022,36023
2e0qA	104	69.52		
1zymA	258	69.60	a.60.10.1,c.8.1.2	18110,30705
1y6vA	449	70.15	c.76.1.1	122674
1mc0A	368	75.73	d.110.2.1,d.110.2.1	78937,78938
2qdfA	335	75.78		
2avxA	171	76.49		
1u9cA	224	76.81	c.23.16.2	113234
2p3rA	510	77.12	c.55.1.4,c.55.1.4	139471,139472
1uliA	460	77.98	b.33.1.2,d.129.3.3	107921,107922
2r8cA	426	80.19		
3b5vA	248	81.29		
3boeA	210	81.48		
2cy2A	174	84.33	d.108.1.1	131016
1avsA	90	84.36	a.39.1.5	17226
2gb3A	409	85.24	c.67.1.1	134903
3bqxA	150	87.27		
1dpbA	243	87.31	c.43.1.1	32618
1xvwA	160	87.53	c.47.1.10	122387
2iqtA	296	89.55