# List of top-scoring protein chains for t06-w0.5-1-CB8-sep9-0.3-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2g7uA	257	4.54e-25		
1tf1A	198	7.11e-25	d.110.2.2	106826
2ia2A	265	1.01e-24		
1mkmA	249	2.73e-24	a.4.5.33,d.110.2.2	79242,79243
1yspA	181	1.08e-23		
2o99A	182	1.46e-22	d.110.2.2	138952
1ysqA	193	1.90e-22		
3bjnA	165	3.97e-22		
2o0yA	260	7.43e-22		
2uzhA	165	0.5638		
1gx1A	160	0.7602	d.79.5.1	70675
1mc0A	368	0.7803	d.110.2.1,d.110.2.1	78937,78938
1iv3A	152	0.7886	d.79.5.1	76828
1t0aA	159	1.169	d.79.5.1	112192
2qq9A	226	3.899		
2uv0E	175	7.372		
1vhsA	175	7.459	d.108.1.1	100698
1yvoA	172	9.364	d.108.1.1	124106
2idlA	117	9.98		
2p35A	259	12.89		
2basA	431	13.73	c.1.33.1,d.110.6.2	128244,128245
1jx4A	352	15.58	d.240.1.1,e.8.1.7	90378,90379
1k6kA	143	16.55	a.174.1.1	77274
1i6lA	328	16.70	c.26.1.1	66041
2pn1A	331	20.12		
1t94A	459	24.05	d.240.1.1,e.8.1.7	106701,106702
2zmfA	189	26.37		
2e0qA	104	26.44		
1nlfA	279	26.75	c.37.1.11	85850
1rd5A	262	28.91	c.1.2.4	111772
1z7gA	217	29.20	c.61.1.1	124624
2iqtA	296	29.49		
3b6nA	187	30.69		
1xvqA	175	32.50	c.47.1.10	116094
2j8mA	172	33.00		
1jpkA	388	35.56	c.1.22.1	67026
3ciwA	348	36.30		
1yr0A	175	37.08	d.108.1.1	123905
1nu0A	138	39.62	c.55.3.8	92165
2infA	359	40.09		
2d4wA	504	41.26		
2i9dA	217	42.40		
2vluA	122	42.46		
1vz0A	230	43.83	a.4.14.1,d.268.1.1	108929,108930
1zzoA	136	44.40	c.47.1.10	125913
2r7hA	177	47.11		
2okjA	504	48.00		
1r3sA	367	49.78	c.1.22.1	96963
2jejA	358	51.47	d.240.1.1,e.8.1.7	138284,138285
2bkwA	385	54.27	c.67.1.3	128714
2obfA	289	54.79		
2f51A	118	55.85		
2ywiA	196	56.89		
1tdzA	272	57.59	a.156.1.2,b.113.1.1,g.39.1.8	106787,106788,106789
1surA	215	60.32	c.26.2.2	31620
2depA	356	62.64		
2ez2A	456	64.16		
1r26A	125	65.63	c.47.1.1	96847
2h9bA	312	66.23		
1xk7A	408	66.82	c.123.1.1	122071
1p0zA	131	68.29	d.110.6.1	93882
2jc5A	259	69.58		
1x52A	124	71.14		
2cvhA	220	71.29		
2ijzA	428	71.86		
1vkpA	383	74.16	d.126.1.6	108686
2h98A	313	75.42		
2e4sA	189	78.20		
1k0eA	453	78.33	d.161.1.1	67938
3b5vA	248	79.45		
2gdjA	264	80.54	c.37.1.11	135018
1a53	247	81.26		
1h2kA	349	82.04	b.82.2.6	76572
1a53A	247	84.82	c.1.2.4	28564
2ha8A	184	85.86		
1cttA	294	88.45	c.97.1.1,c.97.1.1	36022,36023
2f7bA	233	89.31		
1y4jA	284	89.54	d.169.1.7	122620
1r89A	437	89.80	a.160.1.3,d.218.1.7,d.58.16.2	97221,97222,97223