# List of top-scoring protein chains for t06-80-60-80-str2+near-backbone-11-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2ia2A	265	3.18e-19		
1tf1A	198	5.78e-19	d.110.2.2	106826
1mkmA	249	1.14e-18	a.4.5.33,d.110.2.2	79242,79243
1ysqA	193	1.50e-18		
2o99A	182	1.94e-17	d.110.2.2	138952
2g7uA	257	3.42e-17		
1yspA	181	4.42e-17		
2o0yA	260	3.36e-16		
3bjnA	165	2.34e-15		
1l3lA	234	0.8072	a.4.6.2,d.110.5.1	73541,73542
1mzhA	225	3.004	c.1.10.1	79698
1khyA	148	8.361	a.174.1.1	77410
1n7kA	234	11.65	c.1.10.1	85374
3bz6A	183	13.74		
1qwgA	251	14.31	c.1.27.1	96473
3b4uA	294	15.96		
2h9aB	310	18.80		
2hehA	387	20.40		
1r0vA	305	21.52	c.52.2.1,c.52.2.1,d.75.1.1	96742,96743,96744
2qikA	285	24.42		
1ub3A	220	24.58	c.1.10.1	88395
1p1xA	260	25.91	c.1.10.1	104060
2uv0E	175	26.27		
2ehhA	294	26.74		
2btuA	346	27.79		
2nr3A	183	27.85		
1lfpA	249	28.28	e.39.1.1	73885
1kllA	130	30.04	d.32.1.2	72720
2obfA	289	30.88		
1a0gA	282	31.22	e.17.1.1	43276
2rfaA	232	31.30		
2yxzA	311	32.80		
2abk	211	33.09		
1xkyA	301	34.05	c.1.10.1	122094
2pcqA	283	34.96		
2cxaA	256	35.70	d.108.1.6	130993
2abkA	211	35.83	a.96.1.1	18743
1z85A	234	36.11		
2z10A	194	37.44		
2qmlA	198	37.99		
1pt6A	213	38.18	c.62.1.1	95091
1dqeA	137	39.31	a.39.2.1	17388
1rhcA	330	42.67	c.1.16.3	97468
2qiwA	255	44.42		
2bogX	286	45.20		
1f8rA	498	45.48	c.3.1.2,d.16.1.5	30410,37974
1o5kA	306	45.90	c.1.10.1	92504
3bciA	186	46.63		
2in3A	216	47.55		
1oaiA	59	47.67	a.5.2.3	81255
1qxoA	388	47.88	d.258.1.1	96539
2a2lA	145	48.43	d.110.9.1	126035
2it1A	362	49.11		
1v6zA	228	51.72	b.122.1.2,c.116.1.5	113551,113552
3cgxA	242	52.33		
2depA	356	53.76		
2ywnA	157	54.34		
1qtqA	553	54.37	b.53.1.2,c.26.1.1	26940,31579
2p71A	132	55.51	a.39.2.1	139516
1aquA	297	55.53	c.37.1.5	31942
1rsgA	516	56.60		
1iicA	422	57.65	d.108.1.2,d.108.1.2	62422,62423
2hmvA	144	59.99	c.2.1.9	136615
1ornA	226	60.32	a.96.1.1	87342
2j41A	207	61.01		
3daaA	277	62.23	e.17.1.1	43272
2a4xA	138	62.29	d.32.1.2	126166
2iyeA	263	64.07		
1a19A	90	64.52	c.9.1.1	30831
3cklA	298	65.65		
2pt7A	330	66.57		
1bm8	99	68.98		
2f4dA	184	69.23		
3bfxA	296	69.45		
2gcgA	330	69.88		
2egvA	229	70.42		
2v9dA	343	70.98		
1twuA	139	71.39	d.32.1.8	107413
1f3vA	179	72.93	d.58.22.1	39382
2yzhA	171	75.31		
2qkiC	343	78.86		
1ay7B	89	79.26	c.9.1.1	30836
1nd4A	264	79.68	d.144.1.6	91815
1uocA	289	80.71	c.55.3.9	99686
1xkpB	124	81.20	d.198.1.1	122087
1tdzA	272	81.37	a.156.1.2,b.113.1.1,g.39.1.8	106787,106788,106789
1r85A	379	84.21	c.1.8.3	104839
1p0zA	131	84.54	d.110.6.1	93882
2gn4A	344	86.02		
3c8nA	356	87.69		
1ls6A	295	89.62	c.37.1.5	91115