# List of top-scoring protein chains for T0412.t04-w0.5 hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1yspA	181	6.41e-21		
1mkmA	249	5.51e-20	a.4.5.33,d.110.2.2	79242,79243
2ia2A	265	1.52e-18		
1td5A	202	8.66e-18	d.110.2.2	106767
2o99A	182	9.22e-18	d.110.2.2	138952
1tf1A	198	2.10e-17	d.110.2.2	106826
2g7uA	257	2.66e-17		
1ysqA	193	5.23e-17		
2o0yA	260	1.34e-13		
3bjnA	165	1.01e-12		
1x42A	232	19.99	c.108.1.1	121677
1u0tA	307	22.54	e.52.1.1	107567
1y3hA	307	22.58		
2pjhB	193	45.98		
1e32A	458	68.36	b.52.2.3,c.37.1.20,d.31.1.1	59183,59184,59185
1ww7A	160	81.74		
2odsA	265	83.03		
1h2vZ	156	83.42	d.58.7.1	76595
2z67A	456	85.53