# List of top-scoring protein chains for t04-w0.5-1-str4-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2ia2A 265 9.34e-19 2g7uA 257 1.04e-18 1tf1A 198 3.43e-18 d.110.2.2 106826 1mkmA 249 6.89e-18 a.4.5.33,d.110.2.2 79242,79243 1ysqA 193 1.76e-17 1yspA 181 2.85e-17 1td5A 202 3.01e-17 d.110.2.2 106767 2o99A 182 4.30e-17 d.110.2.2 138952 3bjnA 165 1.52e-16 2o0yA 260 3.29e-16 2e4sA 189 0.8376 1mc0A 368 1.132 d.110.2.1,d.110.2.1 78937,78938 2zmfA 189 4.985 1i1dA 161 7.146 d.108.1.1 61526 2r1iA 172 9.320 2uzhA 165 14.12 2ge3A 170 14.85 d.108.1.1 135044 2j8mA 172 19.72 2a2lA 145 19.90 d.110.9.1 126035 1n71A 180 20.08 d.108.1.1 85370 2euiA 153 20.94 d.108.1.1 132387 2basA 431 23.33 c.1.33.1,d.110.6.2 128244,128245 2uv0E 175 26.80 2oh1A 179 27.25 1n7kA 234 28.32 c.1.10.1 85374 2ob0A 170 29.14 1bywA 110 30.28 d.110.3.6 40912 1m4iA 181 33.18 d.108.1.1 74457 1bjwA 382 33.32 c.67.1.1 34349 2reeA 224 33.75 1rpxA 230 35.59 c.1.2.2 28536 2v0uA 146 36.21 1tkjA 284 36.74 c.56.5.4 119296 2ganA 190 38.84 d.108.1.1 134889 1n9lA 109 38.93 d.110.3.6 85468 1k6kA 143 42.23 a.174.1.1 77274 1b5pA 385 42.94 c.67.1.1 90403 1pt7A 437 43.53 c.123.1.1 95093 2gb4A 252 43.62 2r6oA 294 43.70 2fl4A 149 46.70 d.108.1.1 133706 2ae6A 166 50.71 d.108.1.1 126600 1w5dA 462 55.41 e.3.1.3 120642 2jg0A 535 55.46 1xjo 284 55.88 1ctt 294 55.90 1q7eA 428 56.09 c.123.1.1 96035 1v9yA 167 61.01 d.110.3.2 108454 2z14A 133 62.35 1sw2A 275 63.06 c.94.1.1 106064 2fiaA 162 65.91 d.108.1.1 133514 1yr0A 175 67.37 d.108.1.1 123905 1gheA 177 71.36 d.108.1.1 76222 1nowA 507 71.60 c.1.8.6,d.92.2.1 85936,85937 1nk4A 580 71.66 c.55.3.5,e.8.1.1 91923,91924 1zu0A 529 74.34 1cs0A 1073 75.95 a.92.1.1,c.24.1.1,c.30.1.1,c.30.1.1,d.142.1.2,d.142.1.2 18558,31487,31673,31674,41518,41519 1jakA 512 76.37 c.1.8.6,d.92.2.1 66472,66473 2i6cA 160 76.48 d.108.1.1 137095 1jnuA 104 77.10 d.110.3.6 71762 1q7sA 117 77.27 c.131.1.1 96055 2g3aA 152 78.10 d.108.1.1 134557 1rlkA 117 80.63 c.131.1.1 97651 1ykdA 398 81.17 1stzA 338 81.25 a.4.5.51,d.110.2.3 106009,106010 2fiwA 172 83.91 d.108.1.1 133539 1xocA 520 83.93 c.94.1.1 122201 2ha8A 184 84.07 2hh8A 149 87.07 1nxiA 132 87.46 d.58.47.1 86381 2r7hA 177 88.68 2adcA 229 89.50 d.58.7.1,d.58.7.1 126582,126583