# List of top-scoring protein chains for t04-w0.5-1-str2-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2ia2A	265	3.38e-17		
2g7uA	257	4.04e-17		
1tf1A	198	1.08e-16	d.110.2.2	106826
1mkmA	249	1.79e-16	a.4.5.33,d.110.2.2	79242,79243
1td5A	202	5.19e-16	d.110.2.2	106767
1ysqA	193	6.82e-16		
2o99A	182	1.05e-15	d.110.2.2	138952
1yspA	181	1.06e-15		
3bjnA	165	3.42e-15		
2o0yA	260	7.91e-15		
2e4sA	189	0.9122		
1mc0A	368	1.321	d.110.2.1,d.110.2.1	78937,78938
2zmfA	189	6.191		
2r1iA	172	6.436		
2a2lA	145	12.71	d.110.9.1	126035
2ob0A	170	13.57		
2ge3A	170	18.94	d.108.1.1	135044
1n71A	180	20.80	d.108.1.1	85370
1m4iA	181	20.87	d.108.1.1	74457
2uzhA	165	23.76		
1i1dA	161	24.04	d.108.1.1	61526
1bywA	110	24.58	d.110.3.6	40912
2reeA	224	26.17		
2gb4A	252	26.89		
2euiA	153	27.63	d.108.1.1	132387
2uv0E	175	28.96		
1ykdA	398	29.97		
1ctt	294	32.00		
2basA	431	37.84	c.1.33.1,d.110.6.2	128244,128245
2fiaA	162	37.86	d.108.1.1	133514
1w5dA	462	39.19	e.3.1.3	120642
1n9lA	109	42.18	d.110.3.6	85468
2ganA	190	44.94	d.108.1.1	134889
1pt7A	437	46.68	c.123.1.1	95093
2r7hA	177	50.81		
2z14A	133	51.90		
1q7eA	428	53.79	c.123.1.1	96035
2fl4A	149	54.65	d.108.1.1	133706
2ae6A	166	56.07	d.108.1.1	126600
2oh1A	179	61.58		
1jakA	512	63.07	c.1.8.6,d.92.2.1	66472,66473
1xocA	520	64.34	c.94.1.1	122201
2fiwA	172	64.62	d.108.1.1	133539
1p97A	114	66.97	d.110.3.7	94382
2depA	356	68.05		
1v9yA	167	68.09	d.110.3.2	108454
1gheA	177	68.35	d.108.1.1	76222
1bjwA	382	71.86	c.67.1.1	34349
2v0uA	146	74.13		
2r6oA	294	74.18		
1k6kA	143	80.25	a.174.1.1	77274
1sw2A	275	80.61	c.94.1.1	106064
1qsmA	152	81.99	d.108.1.1	40808
1s3zA	165	82.46	d.108.1.1	105250
2j8mA	172	82.50		
1stzA	338	85.40	a.4.5.51,d.110.2.3	106009,106010
1zu0A	529	85.95		
1tkjA	284	88.90	c.56.5.4	119296