# List of top-scoring protein chains for t04-w0.5-1-o_notor2-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2g7uA	257	1.61e-18		
2ia2A	265	1.90e-18		
1tf1A	198	8.41e-18	d.110.2.2	106826
1mkmA	249	1.08e-17	a.4.5.33,d.110.2.2	79242,79243
1ysqA	193	4.26e-17		
1yspA	181	4.85e-17		
1td5A	202	7.67e-17	d.110.2.2	106767
2o99A	182	1.06e-16	d.110.2.2	138952
3bjnA	165	1.75e-16		
2o0yA	260	5.58e-16		
2e4sA	189	2.201		
1mc0A	368	2.723	d.110.2.1,d.110.2.1	78937,78938
1i1dA	161	5.976	d.108.1.1	61526
2r1iA	172	6.629		
1b5pA	385	13.28	c.67.1.1	90403
1n71A	180	13.61	d.108.1.1	85370
1bjwA	382	14.13	c.67.1.1	34349
2zmfA	189	14.30		
2r6oA	294	21.89		
2uzhA	165	21.97		
2a2lA	145	22.66	d.110.9.1	126035
2ob0A	170	22.84		
2ge3A	170	23.71	d.108.1.1	135044
1pt7A	437	24.39	c.123.1.1	95093
1ht6A	405	26.41	b.71.1.1,c.1.8.1	83629,83630
1b8oA	284	28.25	c.56.2.1	33762
2uv0E	175	28.51		
1jakA	512	32.04	c.1.8.6,d.92.2.1	66472,66473
1q7eA	428	34.85	c.123.1.1	96035
2qq9A	226	35.01		
1bywA	110	35.38	d.110.3.6	40912
2j8mA	172	35.57		
2oh1A	179	37.49		
2basA	431	37.92	c.1.33.1,d.110.6.2	128244,128245
2euiA	153	42.71	d.108.1.1	132387
2z14A	133	43.99		
1rpxA	230	44.36	c.1.2.2	28536
1k6kA	143	44.49	a.174.1.1	77274
2depA	356	45.81		
2ganA	190	56.28	d.108.1.1	134889
2v0uA	146	58.35		
2gb4A	252	60.47		
1gheA	177	61.89	d.108.1.1	76222
1ctt	294	62.78		
3cla	213	63.93		
1m4iA	181	64.20	d.108.1.1	74457
2fl4A	149	65.18	d.108.1.1	133706
1w7lA	422	65.77	c.67.1.1	109226
1nxiA	132	66.12	d.58.47.1	86381
2adcA	229	66.66	d.58.7.1,d.58.7.1	126582,126583
1sw2A	275	69.35	c.94.1.1	106064
1xocA	520	69.44	c.94.1.1	122201
1v9yA	167	70.05	d.110.3.2	108454
1kay	381	71.70		
1lc5A	364	72.09	c.67.1.1	73827
1n9lA	109	72.42	d.110.3.6	85468
1w5dA	462	74.82	e.3.1.3	120642
1uiuA	502	79.98	c.94.1.1	99434
2f7bA	233	79.98		
2ogwA	310	80.16		
1ajsA	412	84.81	c.67.1.1	34276
1xebA	150	87.86	d.108.1.1	115219
2abk	211	89.94