# List of top-scoring protein chains for t04-w0.5-1-n_sep-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2g7uA 257 1.56e-19 2ia2A 265 1.70e-19 1tf1A 198 3.36e-19 d.110.2.2 106826 1mkmA 249 9.99e-19 a.4.5.33,d.110.2.2 79242,79243 1td5A 202 2.92e-18 d.110.2.2 106767 2o99A 182 3.43e-18 d.110.2.2 138952 1yspA 181 3.57e-18 1ysqA 193 5.23e-18 3bjnA 165 2.80e-17 2o0yA 260 3.91e-17 2e4sA 189 0.4723 2zmfA 189 1.763 1mc0A 368 2.759 d.110.2.1,d.110.2.1 78937,78938 2r1iA 172 5.857 1i1dA 161 7.936 d.108.1.1 61526 2a2lA 145 10.72 d.110.9.1 126035 2uzhA 165 12.19 2ge3A 170 12.24 d.108.1.1 135044 2uv0E 175 14.42 1n71A 180 16.32 d.108.1.1 85370 2ob0A 170 16.87 1m4iA 181 19.77 d.108.1.1 74457 2j8mA 172 20.07 2basA 431 20.86 c.1.33.1,d.110.6.2 128244,128245 2r6oA 294 21.03 2euiA 153 26.91 d.108.1.1 132387 2ganA 190 29.15 d.108.1.1 134889 2ae6A 166 30.13 d.108.1.1 126600 1jakA 512 32.28 c.1.8.6,d.92.2.1 66472,66473 1b5pA 385 36.29 c.67.1.1 90403 2oh1A 179 38.25 1bjwA 382 40.36 c.67.1.1 34349 1ctt 294 40.57 1k6kA 143 42.04 a.174.1.1 77274 2jg0A 535 44.84 1kjqA 391 45.40 b.84.2.1,c.30.1.1,d.142.1.2 72616,72617,72618 2fiwA 172 46.12 d.108.1.1 133539 1n9lA 109 46.84 d.110.3.6 85468 1w5dA 462 47.32 e.3.1.3 120642 1ep8A 112 47.64 c.47.1.1 64907 1v9yA 167 48.19 d.110.3.2 108454 1cs0A 1073 49.50 a.92.1.1,c.24.1.1,c.30.1.1,c.30.1.1,d.142.1.2,d.142.1.2 18558,31487,31673,31674,41518,41519 1bywA 110 49.99 d.110.3.6 40912 1rpxA 230 50.41 c.1.2.2 28536 2gb4A 252 53.01 2fiaA 162 58.79 d.108.1.1 133514 2f5gA 133 59.17 d.58.57.1 132991 1nk4A 580 60.07 c.55.3.5,e.8.1.1 91923,91924 2bsxA 253 60.89 c.56.2.1 129128 2v0uA 146 61.65 1ykdA 398 63.62 1sw2A 275 64.19 c.94.1.1 106064 1pt7A 437 65.55 c.123.1.1 95093 2pdoA 144 76.05 1q2yA 140 77.66 d.108.1.1 95655 1vhmA 195 78.81 d.110.2.1 100691 1n7kA 234 80.43 c.1.10.1 85374 2r7hA 177 82.04 1ht6A 405 83.09 b.71.1.1,c.1.8.1 83629,83630 1lswA 131 83.74 d.110.3.2 78181 1b8oA 284 84.77 c.56.2.1 33762 1q7sA 117 86.37 c.131.1.1 96055 1s3zA 165 87.07 d.108.1.1 105250 1q6zA 528 89.56 c.31.1.3,c.36.1.5,c.36.1.9 111655,111656,111657