# List of top-scoring protein chains for t04-w0.5-1-n_notor2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2ia2A 265 1.98e-25 1tf1A 198 4.68e-25 d.110.2.2 106826 2g7uA 257 6.67e-25 1mkmA 249 2.21e-24 a.4.5.33,d.110.2.2 79242,79243 1td5A 202 3.49e-24 d.110.2.2 106767 1ysqA 193 1.20e-23 1yspA 181 1.66e-23 2o99A 182 1.75e-23 d.110.2.2 138952 2o0yA 260 2.86e-22 3bjnA 165 1.59e-21 2e4sA 189 0.3414 1mc0A 368 0.3711 d.110.2.1,d.110.2.1 78937,78938 2zmfA 189 2.180 1jakA 512 2.733 c.1.8.6,d.92.2.1 66472,66473 2r1iA 172 3.090 2ffcA 353 3.331 c.1.2.3 133378 1n71A 180 3.392 d.108.1.1 85370 1ry6A 360 4.102 c.37.1.9 98090 2basA 431 4.290 c.1.33.1,d.110.6.2 128244,128245 2j8mA 172 5.010 1j31A 262 5.613 d.160.1.2 90808 2uzhA 165 6.303 2ge3A 170 6.551 d.108.1.1 135044 1i1dA 161 6.803 d.108.1.1 61526 2uv0E 175 7.270 1nowA 507 8.645 c.1.8.6,d.92.2.1 85936,85937 2oh1A 179 10.09 1xwl 580 10.62 1bywA 110 11.20 d.110.3.6 40912 2cxaA 256 13.55 d.108.1.6 130993 2depA 356 13.82 1vhmA 195 14.92 d.110.2.1 100691 2oolA 337 15.29 2adcA 229 16.11 d.58.7.1,d.58.7.1 126582,126583 2a2lA 145 16.42 d.110.9.1 126035 2ob0A 170 17.13 1vr5A 547 17.71 c.94.1.1 120437 2r6oA 294 18.65 1s3zA 165 18.69 d.108.1.1 105250 1p2hA 571 18.94 a.138.1.3,c.3.1.4,d.168.1.1 93930,93931,93932 2btfA 375 19.81 c.55.1.1,c.55.1.1 33429,33430 1bw0A 416 20.36 c.67.1.1 34385 2ehzA 302 20.48 2o57A 297 21.84 1ars 396 22.09 2ae6A 166 22.61 d.108.1.1 126600 1w5dA 462 23.25 e.3.1.3 120642 2gb4A 252 23.86 2qq9A 226 23.96 1m4iA 181 24.85 d.108.1.1 74457 1xjo 284 25.39 2bkhA 814 29.64 1v04A 355 30.85 b.68.6.2 100240 2cvzA 289 31.22 a.100.1.1,c.2.1.6 130890,130891 2ganA 190 31.25 d.108.1.1 134889 2dyuA 334 31.95 2o0bA 450 32.71 1ep3B 262 32.89 b.43.4.2,c.25.1.3 25664,31554 1yr0A 175 33.21 d.108.1.1 123905 1ht6A 405 33.30 b.71.1.1,c.1.8.1 83629,83630 2hxvA 360 34.33 c.71.1.2,c.97.1.2 136859,136860 2ha8A 184 34.64 1tkjA 284 36.21 c.56.5.4 119296 2oo3A 283 37.15 2dxqA 150 39.28 1ct9A 553 40.58 c.26.2.1,d.153.1.1 31616,41834 1rpxA 230 41.35 c.1.2.2 28536 2v0uA 146 41.70 2bsxA 253 42.42 c.56.2.1 129128 1wstA 417 44.18 c.67.1.1 121244 1n9lA 109 44.24 d.110.3.6 85468 2a4xA 138 44.61 d.32.1.2 126166 1qsmA 152 45.21 d.108.1.1 40808 1wrvA 308 45.39 2bs9A 503 45.53 b.71.1.2,c.1.8.3 129062,129063 1yuwA 554 45.54 b.130.1.1,c.55.1.1,c.55.1.1 124070,124071,124072 1z41A 338 49.36 c.1.4.1 124421 2e11A 266 49.72 1ep8A 112 49.94 c.47.1.1 64907 1z6gA 218 51.58 1n7kA 234 52.95 c.1.10.1 85374 1ykdA 398 53.14 1p0zA 131 55.68 d.110.6.1 93882 2fiwA 172 56.27 d.108.1.1 133539 1kjwA 295 57.23 b.34.2.1,c.37.1.1 68643,68644 1ahxA 396 57.35 c.67.1.1 34293 2r7hA 177 63.13 1ez4A 318 64.56 c.2.1.5,d.162.1.1 64917,64918 1mzbA 136 66.37 a.4.5.42 91497 1q2yA 140 66.58 d.108.1.1 95655 3cla 213 67.29 2i6cA 160 67.42 d.108.1.1 137095 1t70A 255 69.20 d.159.1.9 112275 2f5gA 133 70.33 d.58.57.1 132991 1lci 550 72.43 1han 297 73.75 1jnuA 104 73.76 d.110.3.6 71762 1b8oA 284 74.43 c.56.2.1 33762 3bdzA 397 74.87 1a99A 344 74.91 c.94.1.1 35812 1o98A 511 75.16 c.105.1.1,c.76.1.3 86684,86685 1f89A 291 76.85 d.160.1.1 64988 1qf6A 642 77.54 c.51.1.1,d.15.10.1,d.67.1.1,d.104.1.1 33210,39551,39562,40759 1kutA 230 78.84 d.143.1.1 73017 1gx1A 160 79.12 d.79.5.1 70675 2vafA 378 79.13 2eiyA 308 79.97 2de6A 392 80.90 b.33.1.2,d.129.3.3 131415,131416 2pajA 492 81.85 1ni4A 365 82.00 c.36.1.11 85728 2qw5A 335 82.47 1hynP 379 83.33 d.112.1.2 61408 1xebA 150 83.70 d.108.1.1 115219 2eabA 899 84.54 1zosA 230 85.02 1q7sA 117 85.03 c.131.1.1 96055 1wwzA 159 85.48 d.108.1.1 121380 2uxyA 341 85.62 1s0aA 429 86.00 c.67.1.4 98263 2nwdX 130 86.73 d.2.1.2 138718 1v9yA 167 86.74 d.110.3.2 108454 1lc5A 364 86.80 c.67.1.1 73827 3cswA 285 87.35 2gx5A 170 88.32 2fiaA 162 89.09 d.108.1.1 133514