# List of top-scoring protein chains for t04-w0.5-1-n_notor-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2ia2A	265	1.82e-20		
2g7uA	257	1.83e-20		
1tf1A	198	4.62e-20	d.110.2.2	106826
1mkmA	249	1.39e-19	a.4.5.33,d.110.2.2	79242,79243
2o99A	182	3.68e-19	d.110.2.2	138952
1td5A	202	3.68e-19	d.110.2.2	106767
1yspA	181	5.55e-19		
1ysqA	193	5.69e-19		
2o0yA	260	5.42e-18		
3bjnA	165	6.54e-18		
2e4sA	189	0.7381		
1mc0A	368	3.165	d.110.2.1,d.110.2.1	78937,78938
2zmfA	189	3.950		
2r1iA	172	7.732		
1i1dA	161	10.63	d.108.1.1	61526
2uzhA	165	10.77		
2ge3A	170	12.41	d.108.1.1	135044
2uv0E	175	13.68		
2r6oA	294	18.21		
2basA	431	21.54	c.1.33.1,d.110.6.2	128244,128245
2jg0A	535	22.25		
1m4iA	181	23.90	d.108.1.1	74457
2ganA	190	24.22	d.108.1.1	134889
1b5pA	385	24.36	c.67.1.1	90403
1jakA	512	25.17	c.1.8.6,d.92.2.1	66472,66473
2a2lA	145	25.93	d.110.9.1	126035
2ob0A	170	27.71		
2j8mA	172	28.14		
1bjwA	382	29.33	c.67.1.1	34349
1bywA	110	29.51	d.110.3.6	40912
1n71A	180	31.10	d.108.1.1	85370
1k6kA	143	33.86	a.174.1.1	77274
1n9lA	109	34.16	d.110.3.6	85468
1ctt	294	36.33		
1cs0A	1073	40.56	a.92.1.1,c.24.1.1,c.30.1.1,c.30.1.1,d.142.1.2,d.142.1.2	18558,31487,31673,31674,41518,41519
1rpxA	230	41.08	c.1.2.2	28536
1ht6A	405	41.91	b.71.1.1,c.1.8.1	83629,83630
2oh1A	179	44.90		
1nk4A	580	46.52	c.55.3.5,e.8.1.1	91923,91924
2ae6A	166	47.55	d.108.1.1	126600
2bsxA	253	49.67	c.56.2.1	129128
2gb4A	252	50.13		
2euiA	153	56.01	d.108.1.1	132387
1pt7A	437	57.84	c.123.1.1	95093
2v0uA	146	62.58		
1kjqA	391	72.56	b.84.2.1,c.30.1.1,d.142.1.2	72616,72617,72618
1b8oA	284	73.14	c.56.2.1	33762
2fiwA	172	73.54	d.108.1.1	133539
1nowA	507	74.05	c.1.8.6,d.92.2.1	85936,85937
1w7lA	422	74.27	c.67.1.1	109226
1kay	381	74.95		
2g3aA	152	75.80	d.108.1.1	134557
1q7sA	117	76.97	c.131.1.1	96055
1sw2A	275	77.12	c.94.1.1	106064
2b61A	377	77.64		
1jnuA	104	78.90	d.110.3.6	71762
1tkjA	284	79.03	c.56.5.4	119296
1u4bA	580	80.98	c.55.3.5,e.8.1.1	107664,107665
1ep8A	112	81.19	c.47.1.1	64907
1n7kA	234	83.84	c.1.10.1	85374
1q7eA	428	86.31	c.123.1.1	96035
1s3zA	165	87.23	d.108.1.1	105250