# List of top-scoring protein chains for t04-w0.5-1-dssp-ehl2-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2ia2A	265	6.65e-18		
2g7uA	257	6.69e-18		
1tf1A	198	2.22e-17	d.110.2.2	106826
1mkmA	249	2.65e-17	a.4.5.33,d.110.2.2	79242,79243
1td5A	202	1.13e-16	d.110.2.2	106767
1ysqA	193	1.36e-16		
1yspA	181	1.84e-16		
2o99A	182	1.88e-16	d.110.2.2	138952
3bjnA	165	8.92e-16		
2o0yA	260	1.46e-15		
2e4sA	189	4.728		
1mc0A	368	7.525	d.110.2.1,d.110.2.1	78937,78938
1b8oA	284	9.540	c.56.2.1	33762
2r6oA	294	13.06		
2r1iA	172	15.69		
1i1dA	161	16.06	d.108.1.1	61526
2a2lA	145	16.84	d.110.9.1	126035
2ob0A	170	21.26		
2zmfA	189	23.71		
2basA	431	24.08	c.1.33.1,d.110.6.2	128244,128245
2uzhA	165	31.81		
2bsxA	253	31.88	c.56.2.1	129128
1ykdA	398	34.81		
1n71A	180	35.92	d.108.1.1	85370
1m4iA	181	38.23	d.108.1.1	74457
2qq9A	226	40.02		
1ht6A	405	41.94	b.71.1.1,c.1.8.1	83629,83630
1w5dA	462	42.12	e.3.1.3	120642
2gb4A	252	43.78		
2ge3A	170	45.01	d.108.1.1	135044
1rpxA	230	45.44	c.1.2.2	28536
1ctt	294	47.89		
1bywA	110	51.27	d.110.3.6	40912
2v0uA	146	52.14		
2ganA	190	52.75	d.108.1.1	134889
1bjwA	382	53.80	c.67.1.1	34349
2oh1A	179	54.99		
2euiA	153	64.24	d.108.1.1	132387
1v9yA	167	64.72	d.110.3.2	108454
2reeA	224	68.80		
2jdcA	146	74.16		
2r7hA	177	74.88		
3cla	213	74.89		
1n9lA	109	76.79	d.110.3.6	85468
1b5pA	385	79.48	c.67.1.1	90403
2g3aA	152	81.25	d.108.1.1	134557
2uv0E	175	82.40