# List of top-scoring protein chains for t04-w0.5-1-bys-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2g7uA	257	1.30e-20		
2ia2A	265	1.51e-20		
1tf1A	198	4.58e-20	d.110.2.2	106826
1mkmA	249	1.03e-19	a.4.5.33,d.110.2.2	79242,79243
1td5A	202	2.68e-19	d.110.2.2	106767
1yspA	181	4.58e-19		
2o99A	182	6.72e-19	d.110.2.2	138952
1ysqA	193	7.40e-19		
3bjnA	165	4.00e-18		
2o0yA	260	5.98e-18		
2e4sA	189	2.033		
1mc0A	368	2.825	d.110.2.1,d.110.2.1	78937,78938
1i1dA	161	8.685	d.108.1.1	61526
2r6oA	294	10.22		
2a2lA	145	12.09	d.110.9.1	126035
2zmfA	189	15.51		
2uzhA	165	15.58		
1n71A	180	19.32	d.108.1.1	85370
2ob0A	170	20.14		
2uv0E	175	21.47		
2r1iA	172	23.09		
2j8mA	172	23.90		
2ge3A	170	24.06	d.108.1.1	135044
1m4iA	181	25.25	d.108.1.1	74457
2basA	431	25.67	c.1.33.1,d.110.6.2	128244,128245
1ctt	294	29.17		
2euiA	153	35.44	d.108.1.1	132387
2gb4A	252	36.20		
1jakA	512	36.50	c.1.8.6,d.92.2.1	66472,66473
1b8oA	284	38.58	c.56.2.1	33762
1w5dA	462	43.31	e.3.1.3	120642
1bywA	110	45.40	d.110.3.6	40912
1bjwA	382	45.82	c.67.1.1	34349
1v9yA	167	54.87	d.110.3.2	108454
2ae6A	166	55.57	d.108.1.1	126600
2ganA	190	57.83	d.108.1.1	134889
2je8A	848	58.57		
1n9lA	109	60.63	d.110.3.6	85468
2oh1A	179	61.22		
2bsxA	253	62.63	c.56.2.1	129128
1b5pA	385	63.80	c.67.1.1	90403
2v0uA	146	65.65		
2z14A	133	65.70		
1pt7A	437	67.26	c.123.1.1	95093
1rpxA	230	74.77	c.1.2.2	28536
1q7eA	428	77.30	c.123.1.1	96035
3boeA	210	80.63		
1ii5A	233	85.58	c.94.1.1	62412
3b6nA	187	88.56