# List of top-scoring protein chains for t04-w0.5-1-alpha-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2ia2A	265	4.86e-20		
2g7uA	257	4.99e-20		
1tf1A	198	2.65e-19	d.110.2.2	106826
1mkmA	249	2.93e-19	a.4.5.33,d.110.2.2	79242,79243
1ysqA	193	1.16e-18		
1td5A	202	1.58e-18	d.110.2.2	106767
1yspA	181	2.67e-18		
2o99A	182	3.40e-18	d.110.2.2	138952
3bjnA	165	1.15e-17		
2o0yA	260	3.09e-17		
2e4sA	189	1.949		
1mc0A	368	3.203	d.110.2.1,d.110.2.1	78937,78938
1i1dA	161	6.087	d.108.1.1	61526
2zmfA	189	14.02		
2a2lA	145	14.35	d.110.9.1	126035
2r6oA	294	16.02		
2uzhA	165	20.59		
2r1iA	172	20.84		
2basA	431	23.79	c.1.33.1,d.110.6.2	128244,128245
1bjwA	382	25.66	c.67.1.1	34349
2uv0E	175	26.63		
1n71A	180	26.83	d.108.1.1	85370
2ob0A	170	29.27		
2gb4A	252	32.26		
2ge3A	170	32.69	d.108.1.1	135044
1b5pA	385	33.50	c.67.1.1	90403
1ctt	294	37.90		
2j8mA	172	39.85		
1pt7A	437	41.78	c.123.1.1	95093
2z14A	133	42.42		
2ganA	190	45.11	d.108.1.1	134889
1bywA	110	46.12	d.110.3.6	40912
2euiA	153	46.49	d.108.1.1	132387
1jakA	512	47.38	c.1.8.6,d.92.2.1	66472,66473
1m4iA	181	48.47	d.108.1.1	74457
1q7eA	428	52.79	c.123.1.1	96035
2v0uA	146	58.49		
1v9yA	167	60.71	d.110.3.2	108454
2depA	356	62.63		
1b8oA	284	63.23	c.56.2.1	33762
1w5dA	462	65.21	e.3.1.3	120642
1k6kA	143	65.68	a.174.1.1	77274
1w7lA	422	69.25	c.67.1.1	109226
1ht6A	405	69.62	b.71.1.1,c.1.8.1	83629,83630
1n9lA	109	70.50	d.110.3.6	85468
2ae6A	166	74.85	d.108.1.1	126600
2adcA	229	75.00	d.58.7.1,d.58.7.1	126582,126583
1stzA	338	75.15	a.4.5.51,d.110.2.3	106009,106010
1nk4A	580	75.88	c.55.3.5,e.8.1.1	91923,91924
2oh1A	179	75.92		
1sw2A	275	76.47	c.94.1.1	106064
1rpxA	230	77.11	c.1.2.2	28536
2r7hA	177	78.54		
1nowA	507	78.62	c.1.8.6,d.92.2.1	85936,85937
3blnA	143	82.41		
2je8A	848	82.65		
1xebA	150	83.18	d.108.1.1	115219
2reeA	224	83.67		
2bsxA	253	84.00	c.56.2.1	129128
2jg0A	535	87.87		
1ahxA	396	89.34	c.67.1.1	34293