# List of top-scoring protein chains for t04-w0.5-1-CB_burial_14_7-0.3-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2ia2A	265	7.47e-17		
2g7uA	257	1.04e-16		
1mkmA	249	2.03e-16	a.4.5.33,d.110.2.2	79242,79243
1tf1A	198	2.37e-16	d.110.2.2	106826
1td5A	202	7.45e-16	d.110.2.2	106767
1yspA	181	1.14e-15		
1ysqA	193	1.70e-15		
2o99A	182	1.82e-15	d.110.2.2	138952
3bjnA	165	8.72e-15		
2o0yA	260	1.02e-14		
1mc0A	368	3.103	d.110.2.1,d.110.2.1	78937,78938
2r6oA	294	5.867		
2e4sA	189	7.306		
2uv0E	175	15.03		
2qybA	181	25.26		
2a2lA	145	25.80	d.110.9.1	126035
1yocA	147	26.08	d.38.1.5	123778
2uzhA	165	26.20		
2ddrA	306	26.95	d.151.1.3	131398
2reeA	224	28.90		
1vhsA	175	29.27	d.108.1.1	100698
2c46A	241	32.21		
1n71A	180	33.84	d.108.1.1	85370
2i6cA	160	34.17	d.108.1.1	137095
2csuA	457	39.41	c.2.1.8,c.23.4.1,c.23.4.1	130781,130782,130783
2r7hA	177	39.86		
1q4uA	151	40.35	d.38.1.5	95828
2qq9A	226	42.60		
1lu4A	136	46.00	c.47.1.10	91124
2ob0A	170	46.38		
1sw2A	275	47.42	c.94.1.1	106064
1ep8A	112	49.81	c.47.1.1	64907
1i9sA	210	51.49	c.45.1.1	62099
1m4iA	181	51.87	d.108.1.1	74457
2basA	431	53.73	c.1.33.1,d.110.6.2	128244,128245
1faaA	124	56.31	c.47.1.1	32738
1ukvY	206	57.07	c.37.1.8	107918
2oh1A	179	57.33		
1nw2A	105	57.73	c.47.1.1	92215
2fiaA	162	58.11	d.108.1.1	133514
1kuxA	207	63.21	d.108.1.1	73021
1d2rA	326	64.55	c.26.1.1	31572
1y9kA	157	65.51	d.108.1.1	122779
2fnaA	357	66.30	a.4.5.11,c.37.1.20	133809,133810
2j8mA	172	67.90		
1ako	268	68.69		
1yghA	164	72.58	d.108.1.1	40802
2j63A	467	74.16		
1rpxA	230	77.76	c.1.2.2	28536
2jg0A	535	77.78		
2amyA	246	78.48	c.108.1.10	127026
2b61A	377	79.85		
1r26A	125	80.20	c.47.1.1	96847
1sh8A	154	80.41	d.38.1.5	105549
2oo3A	283	80.64		
1t0aA	159	86.61	d.79.5.1	112192
2pa7A	141	88.64		
1f5mA	180	88.86	d.110.2.1	40895
1ew0A	130	89.02	d.110.3.2	40905
1yvkA	163	89.58	d.108.1.1	124101