# List of top-scoring protein chains for t04-w0.5-1-CB8-sep9-0.3-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2ia2A	265	2.85e-20		
2g7uA	257	4.52e-20		
1tf1A	198	4.63e-20	d.110.2.2	106826
1mkmA	249	1.45e-19	a.4.5.33,d.110.2.2	79242,79243
1td5A	202	5.58e-19	d.110.2.2	106767
1yspA	181	8.94e-19		
2o99A	182	9.80e-19	d.110.2.2	138952
1ysqA	193	1.29e-18		
3bjnA	165	3.17e-18		
2o0yA	260	1.01e-17		
2e4sA	189	0.3543		
1mc0A	368	0.4343	d.110.2.1,d.110.2.1	78937,78938
2uv0E	175	3.745		
2r7hA	177	6.882		
2qybA	181	6.884		
2zmfA	189	8.059		
1vhsA	175	11.70	d.108.1.1	100698
2a2lA	145	16.63	d.110.9.1	126035
2uzhA	165	16.90		
1lu4A	136	24.71	c.47.1.10	91124
1f5mA	180	25.55	d.110.2.1	40895
2reeA	224	28.16		
2ghpA	292	28.63	d.58.7.1,d.58.7.1,d.58.7.1	135184,135185,135186
1k6kA	143	30.98	a.174.1.1	77274
1ykdA	398	33.51		
1gheA	177	33.96	d.108.1.1	76222
1a7jA	290	35.82	c.37.1.6	31952
1i1dA	161	37.65	d.108.1.1	61526
2amyA	246	38.80	c.108.1.10	127026
2ge3A	170	38.88	d.108.1.1	135044
2bsxA	253	39.07	c.56.2.1	129128
1p0zA	131	43.98	d.110.6.1	93882
2jg0A	535	46.50		
1qm9A	198	46.52	d.58.7.1,d.58.7.1	39207,39208
2ob0A	170	47.85		
1m4iA	181	49.38	d.108.1.1	74457
1stzA	338	52.76	a.4.5.51,d.110.2.3	106009,106010
1gnd	447	54.20		
1ako	268	54.22		
2r6oA	294	57.21		
2csuA	457	57.23	c.2.1.8,c.23.4.1,c.23.4.1	130781,130782,130783
2gx5A	170	61.24		
1ygsA	234	66.23	b.26.1.1	23907
1pt7A	437	69.61	c.123.1.1	95093
1t0aA	159	71.50	d.79.5.1	112192
2b18A	164	71.94		
1vhmA	195	72.18	d.110.2.1	100691
2vj8A	611	73.16		
1mg7A	417	73.25	d.14.1.6,d.58.26.6	84954,84955
1yocA	147	77.34	d.38.1.5	123778
1xa3A	437	78.36	c.123.1.1	115025
1gx1A	160	78.85	d.79.5.1	70675
2hu9A	130	79.65		
1iv3A	152	83.83	d.79.5.1	76828
2gb4A	252	84.90		
2h9bA	312	85.43		
1i7nA	309	86.86	c.30.1.5,d.142.1.3	83681,83682
1bywA	110	87.41	d.110.3.6	40912