# List of top-scoring protein chains for t04-80-60-80-str2+near-backbone-11-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2ia2A 265 1.77e-17 1mkmA 249 5.22e-17 a.4.5.33,d.110.2.2 79242,79243 1tf1A 198 1.47e-16 d.110.2.2 106826 1ysqA 193 6.90e-16 1td5A 202 6.92e-16 d.110.2.2 106767 2o99A 182 2.08e-15 d.110.2.2 138952 1yspA 181 3.98e-15 3bjnA 165 3.72e-14 2o0yA 260 3.78e-14 2g7uA 257 4.07e-14 1z85A 234 1.281 1v6zA 228 1.337 b.122.1.2,c.116.1.5 113551,113552 2nooA 502 1.563 1uiuA 502 1.909 c.94.1.1 99434 1zlqA 502 4.134 c.94.1.1 125253 1p1xA 260 4.743 c.1.10.1 104060 1r0vA 305 6.662 c.52.2.1,c.52.2.1,d.75.1.1 96742,96743,96744 1mzhA 225 7.589 c.1.10.1 79698 2grvA 621 8.897 2egvA 229 8.970 2z10A 194 13.18 2a4aA 281 16.77 c.1.10.1 126150 2qmlA 198 16.79 1in4A 334 17.34 a.4.5.11,c.37.1.20 62597,62598 3b4uA 294 18.10 2fe7A 166 18.57 d.108.1.1 133325 1tibA 269 18.78 c.69.1.17 34738 2ehhA 294 19.53 1q7lA 198 20.79 c.56.5.4 96044 2e4sA 189 21.55 1ygs 234 22.35 1e42A 258 22.55 b.1.10.1,d.105.1.1 22316,40792 2i5tA 188 23.33 2qikA 285 24.75 1ykdA 398 24.80 1in6A 334 25.50 a.4.5.11,c.37.1.20 62601,62602 1pjjA 271 25.80 a.156.1.2,b.113.1.1,g.39.1.8 104164,104165,104166 1tdzA 272 25.89 a.156.1.2,b.113.1.1,g.39.1.8 106787,106788,106789 2a2lA 145 26.19 d.110.9.1 126035 1ygsA 234 26.38 b.26.1.1 23907 3bz6A 183 26.55 3cryA 188 28.33 2dt5A 211 28.80 a.4.5.38,c.2.1.12 131708,131709 1ee8A 266 30.51 a.156.1.2,b.113.1.1,g.39.1.8 75823,75824,75825 1ub3A 220 30.97 c.1.10.1 88395 1xkyA 301 31.80 c.1.10.1 122094 1xcbA 211 32.36 a.4.5.38,c.2.1.12 109552,109553 1l3lA 234 33.65 a.4.6.2,d.110.5.1 73541,73542 2iyeA 263 37.55 2b8eA 273 37.56 c.108.1.7,d.220.1.1 128068,128069 1qfeA 252 38.24 c.1.10.1 29167 1tib 269 38.34 1yqgA 263 38.56 2hehA 387 40.06 1khxA 227 40.78 b.26.1.1 68631 2ahrA 259 41.27 a.100.1.10,c.2.1.6 126775,126776 2dxqA 150 43.84 1vhmA 195 46.22 d.110.2.1 100691 2q4vA 170 46.29 d.108.1.1 139878 2qybA 181 47.12 2i79A 172 47.72 1rgzA 363 48.47 e.3.1.1 97457 2cxaA 256 48.60 d.108.1.6 130993 2fk8A 318 50.89 c.66.1.18 133648 2gcgA 330 52.41 2fiwA 172 52.60 d.108.1.1 133539 2it1A 362 53.48 1qxoA 388 53.50 d.258.1.1 96539 1p3dA 475 55.08 c.5.1.1,c.59.1.1,c.72.2.1 87728,87729,87730 2f4mA 295 57.38 2pcqA 283 57.45 2abkA 211 57.47 a.96.1.1 18743 1khyA 148 58.22 a.174.1.1 77410 2zmfA 189 58.37 1vl4A 447 61.62 d.283.1.1 108718 2r1iA 172 62.31 2iidA 498 62.50 c.3.1.2,d.16.1.5 137426,137427 1kuxA 207 63.68 d.108.1.1 73021 1k4tA 592 66.43 a.2.8.1,d.163.1.2,e.15.1.1 77263,77264,77265 1ytaA 180 68.95 c.55.3.5 124002 1tqxA 227 71.74 c.1.2.2 112614 1t0fA 276 72.28 a.4.5.27,c.52.1.16 112195,112196 1ry6A 360 72.54 c.37.1.9 98090 2q04A 211 73.27 2a0jA 149 74.14 1j9aA 184 75.88 c.55.3.5 84135 1k6zA 141 76.24 d.198.1.1 68247 1stzA 338 77.19 a.4.5.51,d.110.2.3 106009,106010 1fmjA 351 77.31 c.37.1.5 59879 2b18A 164 77.46 2d5wA 603 80.14 2g7rA 117 81.14 1vpbA 451 83.23 d.283.1.1 113950 1o5kA 306 84.90 c.1.10.1 92504 2igiA 180 85.81 1bm8 99 85.87 2g30A 258 86.69 b.1.10.1,d.105.1.1 134546,134547 1zejA 293 87.98