# List of top-scoring protein chains for T0412.t04-w0.5 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.soe.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1yspA 181 3.02e-31 1mkmA 249 1.87e-30 a.4.5.33,d.110.2.2 79242,79243 2ia2A 265 1.40e-27 1td5A 202 8.88e-27 d.110.2.2 106767 2o99A 182 9.54e-27 d.110.2.2 138952 1tf1A 198 2.58e-26 d.110.2.2 106826 2g7uA 257 6.37e-26 1ysqA 193 8.63e-26 2o0yA 260 1.34e-20 3bjnA 165 2.00e-19 1u0tA 307 1.21e+00 e.52.1.1 107567 1y3hA 307 1.21e+00 1x42A 232 1.53e+00 c.108.1.1 121677 2pjhB 193 3.93e+00 1e32A 458 6.58e+00 1e32A b.52.2.3,c.37.1.20,d.31.1.1 59183,59184,59185 2z67A 456 6.84e+00 1njrA 284 1.08e+01 c.50.1.2 103858 1rjwA 339 1.16e+01 b.35.1.2,c.2.1.1 97582,97583 1oltA 457 1.23e+01 c.1.28.2 93334 2fx0A 201 1.40e+01 a.4.1.9,a.121.1.1 134269,134270 1ww7A 160 1.40e+01 2aehA 369 1.42e+01 a.11.2.1,b.55.1.5,d.15.1.4 126625,126626,126627 2j0mA 371 1.42e+01 2al6A 375 1.43e+01 a.11.2.1,b.55.1.5,d.15.1.4 126966,126967,126968 2qr6A 393 1.47e+01 1h2vZ 156 1.58e+01 d.58.7.1 76595 1qz2A 336 1.70e+01 a.118.8.1,d.26.1.1 104663,104664 1p5qA 336 1.70e+01 a.118.8.1,d.26.1.1 104068,104069 1r7rA 816 1.77e+01 b.52.2.3,c.37.1.20,c.37.1.20,d.31.1.1 97203,97204,97205,97206 2issD 208 1.79e+01 1id0A 152 1.79e+01 d.122.1.3 66111 3cf2A 806 1.85e+01 1kgdA 180 1.85e+01 c.37.1.1 68582 2odsA 265 1.88e+01 2f2uA 402 1.90e+01 1dcuA 357 2.03e+01 1frpA e.7.1.1 42943 1mg7A 417 2.13e+01 d.14.1.6,d.58.26.6 84954,84955 2nqtA 352 2.20e+01 1uz5A 402 2.24e+01 b.85.6.1,b.103.1.1,c.57.1.2 100217,100218,100219 2ov5A 261 2.30e+01 1w7dA 137 2.32e+01 2fjkA 305 2.34e+01 1i78A 297 2.36e+01 f.4.4.1 66046 1dbzA 357 2.43e+01 1frpA e.7.1.1 42951 1n25A 368 2.49e+01 c.37.1.20 85264 1svmA 377 2.49e+01 c.37.1.20 112126 1wu7A 434 2.49e+01 c.51.1.1,d.104.1.1 121275,121276 2h1lA 370 2.49e+01 c.37.1.20 135947 1zwmA 177 2.58e+01 2qybA 181 2.62e+01 2jj7A 186 3.00e+01 2v5iA 559 3.01e+01 2r6uA 148 3.03e+01 2dgdA 223 3.13e+01 1xxfC 142 3.31e+01 b.16.1.1 116161 2rmlA 147 3.36e+01 2pn0A 141 3.42e+01 2qeeA 437 3.49e+01 2q08A 427 3.51e+01 2pnkA 428 3.52e+01 2qv5A 261 3.59e+01 2yvyA 278 3.65e+01 1j4nA 271 3.65e+01 f.19.1.1 71510 3c5xC 130 3.68e+01 1fpsA 348 3.71e+01 a.128.1.1 19436 2nvpA 435 3.72e+01 1ir6A 424 4.04e+01 c.107.1.2 71342 1ubxA 367 4.21e+01 a.128.1.1 19439 2o28A 184 4.21e+01 2v5hA 321 4.27e+01 1potA 325 4.32e+01 c.94.1.1 35807 1ubyA 367 4.32e+01 a.128.1.1 19435 1poy1 323 4.45e+01 1pot 2pgsA 451 4.48e+01 2pilA 159 4.60e+01 d.24.1.1 38376 1yt3A 375 4.61e+01 a.60.8.3,a.60.8.3,c.55.3.5 123992,123993,123994 3b9pA 297 4.72e+01 2cxcA 144 4.74e+01 1i5eA 209 4.75e+01 c.61.1.1 71116 1mldA 314 4.87e+01 2cmd c.2.1.5,d.162.1.1 30122,42089 1xxdC 142 4.87e+01 b.16.1.1 116155 3c5eA 570 5.04e+01 1nbwA 607 5.10e+01 c.8.6.1,c.55.1.6,c.55.1.6 80393,80394,80395 1zboA 210 5.25e+01 b.122.1.10 124859 1e2xA 243 5.28e+01 1e2xA a.4.5.6,a.78.1.1 16113,18443 2a19A 175 5.29e+01 1y9uA 323 5.32e+01 c.94.1.1 116594 1v8zA 388 5.35e+01 c.79.1.1 119873 1js3A 486 5.39e+01 c.67.1.6 67215 1q46A 175 5.39e+01 a.60.14.1,b.40.4.5 111594,111595 1hw1A 239 5.45e+01 1e2xA a.4.5.6,a.78.1.1 16111,18441 1q5xA 161 5.62e+01 c.8.7.1 95947 1tqyB 415 5.64e+01 c.95.1.1,c.95.1.1 107247,107248 2yuiA 182 5.72e+01 1wdwB 385 5.78e+01 c.79.1.1 120917 1b47A 304 6.11e+01 2cblA a.39.1.7,a.48.1.1,d.93.1.1 17381,17775,40529 2cblA 305 6.13e+01 2cblA a.39.1.7,a.48.1.1,d.93.1.1 17380,17774,40528 3buxB 329 6.42e+01 2oztA 332 6.67e+01 1izmA 184 6.86e+01 a.199.1.1 90725 2j0jA 656 6.86e+01 2j0kA 656 6.86e+01 2pggA 774 6.88e+01 1x4hA 111 6.90e+01 d.58.7.1 121690 2pusA 852 7.03e+01 1q32A 544 7.04e+01 d.136.1.3,d.136.1.3 104507,104508 2atxA 194 7.04e+01 c.37.1.8 127315 1aozA 552 7.45e+01 1aozA b.6.1.3,b.6.1.3,b.6.1.3 23124,23125,23126 2yvxA 473 7.56e+01 1lkvX 232 7.70e+01 a.118.14.1 73980 1x9nA 688 7.74e+01 a.235.1.1,b.40.4.6,d.142.2.1 115002,115003,115004 1g0yR 312 7.76e+01 1itbB b.1.1.4,b.1.1.4,b.1.1.4 21723,21724,21725 1itbB 315 7.78e+01 1itbB b.1.1.4,b.1.1.4,b.1.1.4 21720,21721,21722 1iraY 319 7.81e+01 1itbB b.1.1.4,b.1.1.4,b.1.1.4 21717,21718,21719 2cltA 367 7.83e+01 b.66.1.1,d.92.1.11 130586,130587 1wndA 495 7.86e+01 c.82.1.1 114751 1yt5A 258 7.92e+01