# List of template models which gave the target the best scores. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.soe.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Template_ID Template_Length Template_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1td5A 180 1.651e-15 d.110.2.2 106767 1yspA 165 7.071e-13 2o99A 179 1.057e-12 d.110.2.2 138952 3bjnA 163 2.287e-12 1ysqA 182 9.743e-11 1tf1A 185 6.334e-10 d.110.2.2 106826 1mkmA 247 2.287e-09 a.4.5.33 79242 d.110.2.2 79243 2o0yA 243 4.305e-09 2g7uA 252 1.041e-08 2ia2A 251 3.499e-08 2o7oA 208 9.378e-02 a.4.1.9 138930 a.121.1.1 138931 2qh0A 130 2.401e-01 1jc4A 146 1.050e+00 1jc4A d.32.1.4 62863 1kdkA 178 1.951e+00 b.29.1.4 72351 1w5rA 274 2.273e+00 d.3.1.5 120643 1f9zA 129 2.667e+00 1qipA d.32.1.1 38484 1gl2B 61 2.756e+00 h.1.15.1 65279 1fa8A 129 2.963e+00 1qipA d.32.1.1 38486 1nd4A 256 3.242e+00 d.144.1.6 91815 2pjsA 115 3.407e+00 2zb9A 189 3.647e+00 2akkA 75 3.818e+00 b.34.11.2 126916 1f5fA 173 3.849e+00 1d2sA b.29.1.4 24222 1h30A 392 3.950e+00 b.29.1.4 76604 b.29.1.4 76605 1ss4A 150 4.105e+00 d.32.1.6 105976 1jthB 68 4.393e+00 h.1.15.1 67271 1ws8A 105 4.565e+00 b.6.1.1 114843 1din 234 4.597e+00 1din 1x9uA 106 4.803e+00 2hyjA 194 5.170e+00 1qu0A 182 5.205e+00 1dykA b.29.1.4 24225 1d2sA 171 5.301e+00 1d2sA b.29.1.4 24221 2p25A 127 5.329e+00 1qipA 177 6.084e+00 1qipA d.32.1.1 38470 1hvvA 68 6.739e+00 1hvvA h.1.15.1 45639 1e2tA 275 7.047e+00 1e2tA d.3.1.5 37121 2okmA 147 8.266e+00 1n7sB 69 9.082e+00 h.1.15.1 80272 2fq4A 185 9.117e+00 a.4.1.9 133937 a.121.1.1 133938 2bszA 268 9.254e+00 d.3.1.5 129131 2dytA 214 9.978e+00 1ifyA 50 1.005e+01 a.5.2.1 71207 2oemA 409 1.005e+01 1lfwA 469 1.024e+01 c.56.5.4 77942 d.58.19.1 77943 2ch5A 345 1.028e+01 c.55.1.5 130453 c.55.1.5 130454 2cwdA 151 1.028e+01 1yuiA 55 1.045e+01 1yuiA g.37.1.1 45073 3b81A 184 1.071e+01 1sfcB 73 1.093e+01 1sfcB h.1.15.1 45644 2qntA 126 1.102e+01 3b5nB 70 1.106e+01 1ecsA 121 1.129e+01 1ecsA d.32.1.2 59407 1pveA 73 1.138e+01 a.189.1.1 104322 1ggvA 233 1.197e+01 1din c.69.1.9 34683 2rasA 201 1.233e+01 2i7rA 116 1.275e+01 d.32.1.2 137102 1w4tA 278 1.281e+01 d.3.1.5 120639 2rjoA 323 1.364e+01 2c21A 140 1.379e+01 d.32.1.1 129649 2r16A 176 1.544e+01 1c4rA 181 1.560e+01 1c4rA b.29.1.4 24229 3c6fA 138 1.561e+01 1bh5A 178 1.592e+01 1qipA d.32.1.1 38476 1ro5A 198 1.607e+01 d.108.1.3 105023 1i4dA 189 1.614e+01 a.238.1.2 61682 1pz7A 189 1.626e+01 b.29.1.4 95405 1nkiA 135 1.671e+01 d.32.1.2 91941 1f56A 92 1.704e+01 2cbp b.6.1.1 22896 2qs7A 139 1.831e+01 1ic2A 80 1.850e+01 h.1.5.1 62247 1egpB 23 1.855e+01 2o6xA 307 1.884e+01 2g7lA 202 1.963e+01 a.4.1.9 134734 a.121.1.1 134735 2f1cX 253 1.967e+01 1kzfA 199 2.113e+01 d.108.1.3 73354 1gx3A 277 2.151e+01 d.3.1.5 70678 2djyB 21 2.239e+01 1zi8A 234 2.337e+01 1uwdA 103 2.463e+01 d.52.8.2 113447 1l2lA 433 2.488e+01 c.72.1.3 77656 3b3qE 188 2.633e+01 1jer 111 2.644e+01 2cbp 1zbsA 284 2.674e+01 c.55.1.5 124870 c.55.1.5 124871 1vls 147 2.749e+01 1vls 1zcbA 319 2.750e+01 a.66.1.1 124901 c.37.1.8 124902 2pjwV 92 2.801e+01 1vi0A 190 2.840e+01 a.4.1.9 100720 a.121.1.1 100721 2ligA 158 2.874e+01 1vls a.24.2.1 16530 1cg2A 390 2.900e+01 1cg2A c.56.5.4 33844 d.58.19.1 39360 1y7bA 535 3.029e+01 b.29.1.23 122687 b.67.2.1 122688 3bcgA 208 3.056e+01 2pbxA 198 3.058e+01 2qqzA 124 3.101e+01 1j58A 373 3.122e+01 b.82.1.2 71531 1rktA 205 3.181e+01 a.4.1.9 97623 a.121.1.1 97624 2f15A 90 3.199e+01 2qkiC 293 3.348e+01 1ksiA 643 3.507e+01 1ksiB b.30.2.1 24408 d.17.2.1 38043 d.17.2.1 38044 1ppoA 217 3.606e+01 d.3.1.1 37020 1xkgA 299 3.630e+01 d.3.1.1 122081 2hz5A 88 3.641e+01 1ppn 213 3.649e+01 1cs8A 2iu5A 180 3.675e+01 2h0bA 182 3.692e+01 2pggA 766 3.701e+01 1jerA 111 3.823e+01 b.6.1.1 23022 1olmA 394 3.851e+01 a.5.3.1 104008 b.132.1.1 104009 c.13.1.1 104010 2cbpA 97 3.964e+01 b.6.1.1 22895 3cdlA 188 3.991e+01