PFRMAT SS TARGET T0412 AUTHOR SAM-T02-server METHOD Using neural net t2k-5740-IDaaHr-5-15-7-15-9-15-13-ebghstl-seeded.net METHOD This is a 4-layer network, with METHOD window units METHOD 5 15 METHOD 7 15 METHOD 9 15 METHOD 13 7 (1 EBGHSTL ) METHOD The input amino acid frequencies were determined from METHOD alignment T0412.t2k-thin90.a2m.gz METHOD with weighted counts, using HenikoffWeight(-1 bits/column, 1) METHOD Counts were regularized to probabilities using METHOD /projects/compbio/lib/recode3.20comp METHOD Total sequence weight for alignment was 365 METHOD MODEL 1 S C 0.846 N C 0.326 A T 0.306 L C 0.387 F C 0.508 S H 0.731 S H 0.817 R H 0.836 D H 0.825 I H 0.893 L H 0.950 E H 0.987 V H 0.993 L H 0.996 Q H 0.996 D H 0.996 I H 0.994 H H 0.986 M H 0.921 E H 0.822 T H 0.480 G C 0.384 E C 0.602 T E 0.447 V E 0.811 A E 0.931 I E 0.951 A E 0.938 T E 0.906 K E 0.693 N T 0.534 D T 0.828 I S 0.305 Y E 0.782 L E 0.977 Q E 0.988 Y E 0.990 I E 0.984 Q E 0.953 I E 0.883 I E 0.789 E E 0.533 S C 0.411 V S 0.356 H S 0.439 A C 0.483 L E 0.673 R E 0.859 F E 0.867 H E 0.780 V E 0.596 D C 0.513 E T 0.587 N T 0.559 A S 0.406 I C 0.398 R E 0.428 P C 0.459 L E 0.368 T H 0.252 M H 0.386 S H 0.505 S H 0.730 N H 0.797 G H 0.796 W H 0.864 M H 0.921 L H 0.896 M H 0.551 S T 0.533 T T 0.712 M S 0.502 N C 0.938 D H 0.833 K H 0.917 A H 0.959 I H 0.983 D H 0.976 N H 0.973 T H 0.960 V H 0.932 R H 0.766 R H 0.566 A H 0.295 N C 0.418 T C 0.620 I C 0.545 T C 0.361 Q C 0.476 K C 0.643 D T 0.499 G T 0.521 I C 0.445 R C 0.606 F C 0.510 E C 0.724 V H 0.964 D H 0.970 D H 0.977 M H 0.991 M H 0.990 A H 0.986 R H 0.987 I H 0.989 R H 0.986 Q H 0.982 V H 0.976 R H 0.967 E H 0.894 Q T 0.489 G T 0.630 Y C 0.656 A E 0.403 S C 0.385 A C 0.576 E T 0.302 H T 0.350 I H 0.221 P C 0.307 F C 0.372 V T 0.496 G T 0.563 G E 0.576 G E 0.864 T E 0.963 I E 0.972 C E 0.969 V E 0.905 L E 0.836 L E 0.704 P E 0.582 M C 0.684 T T 0.645 I T 0.658 Q S 0.677 G C 0.635 Q E 0.648 P E 0.913 V E 0.991 T E 0.994 M E 0.993 G E 0.973 L E 0.833 G E 0.530 G C 0.439 A C 0.362 L G 0.252 D C 0.217 R C 0.285 I C 0.532 K C 0.770 Q H 0.802 N H 0.813 Y H 0.833 D H 0.935 R H 0.910 Y H 0.904 L H 0.937 E H 0.975 L H 0.989 L H 0.994 L H 0.996 N H 0.994 G H 0.991 V H 0.986 Q H 0.987 Q H 0.983 L H 0.978 K H 0.980 K H 0.978 S H 0.936 D H 0.896 S H 0.470 F T 0.593 H C 0.646 Q C 0.632 P C 0.927 I C 0.999 END