# List of top-scoring protein chains for t2k.100-30-dssp-ebghstl hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.soe.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1mkmA 249 2.28e-34 a.4.5.33 79242 d.110.2.2 79243 1yspA 181 8.45e-34 1td5A 202 1.15e-32 d.110.2.2 106767 2o99A 182 1.40e-31 d.110.2.2 138952 1tf1A 198 3.29e-31 d.110.2.2 106826 2ia2A 265 1.10e-29 1ysqA 193 1.42e-28 2g7uA 257 1.60e-28 2o0yA 260 6.71e-24 3bjnA 165 1.23e-23 1mc0A 368 9.26e-04 d.110.2.1 78937 d.110.2.1 78938 1ykdA 398 1.34e-02 1f5mA 180 3.28e-01 1f5mB d.110.2.1 40895 1v5iB 76 3.39e-01 1yw5A 177 3.43e-01 2qybA 181 4.16e-01 1itpA 77 5.00e-01 d.58.3.2 66371 2uv0E 175 5.05e-01 2aexA 346 6.34e-01 2oqrA 230 6.63e-01 2v0uA 146 6.91e-01 2bjoA 136 7.63e-01 2o28A 184 8.66e-01 2fgoA 82 9.47e-01 2gx5A 170 1.03e+00 1vr4A 103 1.32e+00 d.230.5.1 120432 1id0A 152 1.56e+00 d.122.1.3 66111 1s4iA 175 1.60e+00 1n9lA 109 1.63e+00 d.110.3.6 85468 1q7lA 198 1.81e+00 c.56.5.4 96044 1o65A 246 2.01e+00 b.58.1.2 92544 1liiA 363 2.08e+00 c.72.1.1 73921 2b18A 164 2.30e+00 1qwgA 251 2.38e+00 c.1.27.1 96473 2absA 383 2.43e+00 c.72.1.1 126534 2pb2A 420 2.51e+00 1e3mA 800 2.59e+00 1ewqA a.113.1.1 19075 c.37.1.12 32389 c.55.6.1 33746 d.75.2.1 39747 2qdfA 335 2.64e+00 1dgmA 363 2.77e+00 1bx4A c.72.1.1 34936 1r5jA 337 2.96e+00 c.77.1.5 97097 3cblA 377 3.06e+00 2ddzA 190 3.26e+00 1xtlA 175 3.33e+00 3caxA 369 3.41e+00 2f5gA 133 3.51e+00 d.58.57.1 132991 2j6vA 301 3.64e+00 1xtmA 175 4.03e+00 2yvyA 278 4.07e+00 1r7mA 235 4.10e+00 d.95.2.1 111713 d.95.2.1 111714 3c0wA 235 4.19e+00 1t9mA 214 4.22e+00 b.45.1.1 112364 1iurA 88 4.22e+00 a.2.3.1 90704 1f60A 458 4.49e+00 1efcA b.43.3.1 25705 b.44.1.1 25745 c.37.1.8 32140 1qxhA 167 4.51e+00 c.47.1.10 96528 1hbxA 92 4.78e+00 1mnmA d.88.1.1 60930 1l2tA 235 5.15e+00 c.37.1.12 73514 1wb9A 800 5.17e+00 a.113.1.1 120833 c.37.1.12 120834 c.55.6.1 120835 d.75.2.1 120836 1wubA 178 5.46e+00 b.61.6.1 114891 1bavA 309 5.70e+00 1aye c.56.5.1 33806 1b64 91 5.79e+00 1b64 3rubS 123 5.84e+00 1rboC d.73.1.1 39616 2q81A 119 5.94e+00 2pc1A 201 6.01e+00 1crkA 380 6.15e+00 1qh4A a.83.1.1 18458 d.128.1.2 41193 2ae6A 166 6.26e+00 d.108.1.1 126600 1rkuA 206 6.59e+00 c.108.1.11 97627 1bs2A 607 7.00e+00 1bs2A a.27.1.1 16930 c.26.1.1 31597 d.67.2.1 39563 1y96B 85 7.33e+00 2fug5 207 7.37e+00 1hyeA 313 7.44e+00 2cmd c.2.1.5 61400 d.162.1.1 61401 1twdA 256 7.71e+00 c.1.30.1 107397 1lpjA 133 7.81e+00 b.60.1.2 78123 2qvpA 275 8.12e+00 3cgvA 397 8.15e+00 9gafA 295 8.35e+00 1apyA d.153.1.5 42008 2okjA 504 8.47e+00 2nwhA 317 8.50e+00 1jfuA 186 8.51e+00 c.47.1.10 62940 2dgdA 223 8.61e+00 1w79A 489 8.71e+00 e.3.1.3 120680 2q02A 272 9.02e+00 2ou6A 190 9.02e+00 1erv 105 9.02e+00 1erv 1svdM 110 9.13e+00 d.73.1.1 119059 1duxC 94 9.28e+00 1awcA a.4.5.21 16170 1s2oA 244 9.30e+00 c.108.1.10 118846 1gx1A 160 9.52e+00 d.79.5.1 70675 2h5nA 133 9.58e+00 3c19A 186 9.61e+00 1sgjA 284 9.65e+00 c.1.12.5 105535 2atrA 138 9.66e+00 d.108.1.1 127305 2vfjA 366 9.72e+00 2iwtA 125 9.75e+00 1yexA 186 1.00e+01 c.47.1.10 123021 2pbqA 178 1.01e+01 1n8jA 186 1.04e+01 c.47.1.10 85401 2hyvA 308 1.04e+01 1rhcA 330 1.05e+01 c.1.16.3 97468 1adeA 431 1.08e+01 1adeA c.37.1.10 32213 1py5A 326 1.09e+01 d.144.1.7 104389 2qr6A 393 1.11e+01 5eau 548 1.13e+01 5eat 5eauA 548 1.13e+01 a.102.4.1 18851 a.128.1.3 19443 1sedA 117 1.13e+01 a.219.1.1 105449 1g71A 347 1.13e+01 1g71A d.264.1.1 43268 2mysB 166 1.14e+01 1wdcB a.39.1.5 17308 2hx1A 284 1.16e+01 2vjvA 159 1.18e+01 2j3xA 431 1.19e+01 2inpL 89 1.21e+01 2c1cA 312 1.21e+01 c.56.5.1 129630 2e85A 159 1.25e+01 2ifqA 105 1.25e+01 c.47.1.1 137343 1qf5A 431 1.25e+01 1adeA c.37.1.10 32212 1jqgA 433 1.31e+01 c.56.5.1 71791 d.58.3.1 71792 1fb6A 105 1.31e+01 1thx c.47.1.1 32739 2vluA 122 1.33e+01 1qxoA 388 1.33e+01 d.258.1.1 96539 1p0zA 131 1.37e+01 d.110.6.1 93882 1erw 105 1.43e+01 1erv 1ir21 140 1.44e+01 3cloA 258 1.46e+01 1vfrA 218 1.47e+01 1vfrA d.90.1.1 40247 2ph0A 174 1.49e+01 1jr3A 373 1.50e+01 a.80.1.1 63245 c.37.1.20 63246 1s28A 132 1.51e+01 d.198.1.1 105223 1p4kA 295 1.52e+01 d.153.1.5 87772 3c6kA 381 1.53e+01 2qfmA 364 1.53e+01 2q04A 211 1.56e+01 1y791 680 1.62e+01 1m4lA 307 1.62e+01 c.56.5.1 78604 1zxxA 319 1.63e+01 1tljA 213 1.63e+01 d.282.1.1 107126 2ae0X 345 1.64e+01 1vliA 385 1.65e+01 b.85.1.1 108830 c.1.10.6 108831 1louA 101 1.65e+01 1ris d.58.14.1 39323 2fcoA 200 1.66e+01 3ctpA 330 1.70e+01 5eat 548 1.70e+01 5eat 1u55A 188 1.71e+01 d.278.1.1 107677 2v2gA 233 1.74e+01 1aiu 105 1.81e+01 1erv 1jtkA 136 1.83e+01 c.97.1.1 71862 1b6cB 342 1.87e+01 1b6cB d.144.1.7 41673 1gk8I 140 1.87e+01 d.73.1.1 65242 1uwzA 136 1.88e+01 c.97.1.1 108081 2cpmA 94 1.89e+01 2ghrA 302 1.91e+01 c.23.16.8 135208 1y1oA 203 1.92e+01 c.52.1.28 116345 1vjyA 303 1.94e+01 d.144.1.7 108633 1p4dA 330 1.95e+01 d.89.1.5 94101 1fa0A 537 1.95e+01 1fa0B a.160.1.1 75837 d.218.1.3 75838 d.58.16.1 39335 2gaeA 346 1.97e+01 1v3hA 495 2.00e+01 c.1.8.1 108303 1uuqA 440 2.02e+01 c.1.8.3 100015 2r6uA 148 2.04e+01 1wdpA 495 2.06e+01 c.1.8.1 120907 1vlmA 219 2.06e+01 c.66.1.41 108836 3bkbA 377 2.09e+01 1pc6A 146 2.10e+01 d.262.1.1 94430 2trxA 108 2.14e+01 1thx c.47.1.1 32719 1tv8A 340 2.15e+01 c.1.28.3 107352 1mvwB 145 2.16e+01 i.15.1.1 79524 1dzfA 215 2.16e+01 1dzfA c.52.3.1 33344 d.78.1.1 39753 2fv7A 331 2.17e+01 c.72.1.1 134197 2d4pA 141 2.18e+01 2ctc 307 2.19e+01 1aye 2fb2A 340 2.22e+01 1g8yA 279 2.25e+01 1g8yA c.37.1.11 32302 1nlfA 279 2.25e+01 c.37.1.11 85850 8rucI 123 2.26e+01 1rboC d.73.1.1 39629 1u7bA 261 2.27e+01 d.131.1.2 113083 d.131.1.2 113084 1zhhB 242 2.27e+01 1b5pA 385 2.30e+01 c.67.1.1 90403 2o55A 258 2.32e+01 2h1rA 299 2.36e+01 1mnmA 100 2.38e+01 1mnmA d.88.1.1 40232 2hhpA 530 2.40e+01 a.160.1.1 136503 d.218.1.3 136504 d.58.16.1 136505 1eh9A 558 2.43e+01 1ehaA b.1.18.2 21858 b.71.1.1 27785 c.1.8.1 28772 1w7bA 339 2.45e+01 a.65.1.1 114317 2nx9A 464 2.46e+01 2dy1A 665 2.48e+01 1j31A 262 2.50e+01 d.160.1.2 90808 2booA 247 2.55e+01 1w6uA 302 2.55e+01 c.2.1.2 114288 2c8sA 172 2.55e+01 a.3.1.1 130123 1pz7A 204 2.56e+01 b.29.1.4 95405 1t00A 112 2.60e+01 2g0bA 198 2.60e+01 2vdjA 301 2.62e+01 1aerA 205 2.63e+01 1aerA d.166.1.1 42249 2hf2A 283 2.63e+01 2yweA 600 2.64e+01 1v33A 366 2.66e+01 d.264.1.1 100278 2b06A 155 2.70e+01 d.113.1.1 127624 1qjtA 99 2.72e+01 1eh2 a.39.1.6 17335 1m45A 148 2.74e+01 a.39.1.5 78598 1yvkA 163 2.74e+01 d.108.1.1 124101 1hk9A 74 2.74e+01 b.38.1.2 83541 1gpeA 587 2.75e+01 1gpeA c.3.1.2 30387 d.16.1.1 37951 1x0pA 143 2.75e+01 d.58.10.2 121552 2ofkA 183 2.78e+01 1byb 495 2.78e+01 1byb 1ru8A 232 2.82e+01 c.26.2.1 97849 2bo4A 397 2.82e+01 c.68.1.18 128869 2qmlA 198 2.84e+01 1c96A 753 2.85e+01 1amj c.8.2.1 30727 c.83.1.1 35403 1q2lA 939 2.85e+01 d.185.1.1 118731 d.185.1.1 118732 d.185.1.1 118733 d.185.1.1 118734 1f2tB 148 2.86e+01 1f2tB 3c0fB 91 2.86e+01 2r00A 336 2.89e+01 2g2qA 124 2.92e+01 2zc2A 78 2.92e+01 1bjwA 382 2.94e+01 1bjwA c.67.1.1 34349 1rloA 271 3.00e+01 c.108.1.10 111864 1fgxA 288 3.00e+01 1fgxA c.68.1.2 34508 1odkA 235 3.01e+01 c.56.2.1 86863 2nq2C 253 3.02e+01 1c1dA 355 3.05e+01 1bw9A c.2.1.7 30270 c.58.1.1 33918 1q1hA 110 3.09e+01 a.4.5.41 95580 1xw8A 252 3.09e+01 c.6.2.5 116111 2hc5A 117 3.13e+01 1z2uA 150 3.14e+01 d.20.1.1 124389 1lriA 98 3.16e+01 a.134.1.1 74223 2hgcA 102 3.16e+01 1bg2 325 3.18e+01 1bg2 1bg2A 325 3.18e+01 c.37.1.9 32189 2oo6A 409 3.20e+01 1l1lA 739 3.20e+01 c.7.1.4 73470 1vi9A 299 3.22e+01 c.72.1.5 100750 1gefA 123 3.25e+01 1gefA c.52.1.18 60465 1nzjA 298 3.27e+01 c.26.1.1 92377 1vr7A 142 3.34e+01 d.156.1.2 120443 1fyeA 229 3.36e+01 1fyeA c.23.16.4 31477 2hw2A 143 3.38e+01 1kq1A 77 3.39e+01 b.38.1.2 72848 1eexG 173 3.42e+01 1dioG a.23.2.1 16490 1dxjA 242 3.42e+01 1cnsA d.2.1.1 36244 1lml 478 3.43e+01 1lml 1lmlA 478 3.43e+01 d.92.1.3 40295 2fvgA 340 3.44e+01 b.49.3.1 134201 c.56.5.4 134202 1o7eA 276 3.46e+01 e.3.1.1 92622 1zgdA 312 3.47e+01 1vs3A 249 3.48e+01 2qgaB 465 3.48e+01 2ob0A 170 3.49e+01 1tluA 130 3.50e+01 d.156.1.2 107139 1nal1 297 3.50e+01 1nal3 2hp1A 432 3.52e+01 1u04A 771 3.53e+01 b.34.14.1 107539 c.55.3.10 107540 1hw1A 239 3.55e+01 1e2xA a.4.5.6 16111 a.78.1.1 18441 2fgeA 995 3.56e+01 d.185.1.1 133430 d.185.1.1 133431 d.185.1.1 133432 d.185.1.1 133433 2rslA 140 3.60e+01 2rslA c.53.1.1 33345 1ae1A 273 3.65e+01 1bdb c.2.1.2 29943 2a6lA 292 3.71e+01 c.1.10.1 126285 2gsaA 432 3.71e+01 2gsaA c.67.1.4 34446 2ha8A 184 3.73e+01 1we0A 187 3.80e+01 c.47.1.10 120930 1s50A 259 3.83e+01 c.94.1.1 118864 2j66A 428 3.83e+01 2a6nA 292 3.85e+01 c.1.10.1 126289 2ozhA 142 3.85e+01 1mxgA 435 3.87e+01 b.71.1.1 85193 c.1.8.1 85194 1y56A 493 3.88e+01 1e2xA 243 3.89e+01 1e2xA a.4.5.6 16113 a.78.1.1 18443 2j13A 247 3.90e+01 c.6.2.3 137934 1td2A 287 3.90e+01 c.72.1.5 106765 1u2xA 474 3.91e+01 c.72.1.3 107622 2fx0A 201 3.95e+01 a.4.1.9 134269 a.121.1.1 134270 1r13A 148 3.96e+01 d.169.1.1 96782 h.1.1.1 96783 5fbpA 335 3.96e+01 1frpA e.7.1.1 42873 2jhnA 295 3.98e+01 1dmgA 225 3.99e+01 1dmgA c.22.1.1 31036