// This is based on the CASP7 cost function, with some updates
//	to take advantage of new features.
// Weighting is rather arbitrary.
// 	I reduced soft_clashes, to keep from tearing apart nearly
//	right packing.  It needs to be gradually increased.

ConstraintSet try3.sheets
SheetConstraint (T0411)V55 (T0411)I57	(T0411)L139 (T0411)L137	hbond (T0411)H56	1
SheetConstraint (T0411)S120 (T0411)L121	(T0411)Q23 (T0411)S24	hbond (T0411)L121	1
SheetConstraint (T0411)L94 (T0411)F96	(T0411)T119 (T0411)L121	hbond (T0411)F96	1
SheetConstraint (T0411)E93 (T0411)C98	(T0411)V41 (T0411)V46	hbond (T0411)Y97	1
SheetConstraint (T0411)L43 (T0411)V46	(T0411)S60 (T0411)V63	hbond (T0411)D45	1

ConstraintSet try3.helices
HelixConstraint (T0411)S26	(T0411)G35
HelixConstraint (T0411)E48	(T0411)V55
HelixConstraint (T0411)R66	(T0411)A71
HelixConstraint (T0411)P69	(T0411)L74
HelixConstraint (T0411)P76	(T0411)K81
HelixConstraint (T0411)R103	(T0411)H114
HelixConstraint (T0411)S125	(T0411)V130

SetCost \
	align_constraints 40 \
	try3.sheets 10 \
	try3.helices 4 \
	nn1000 1 \
	two_stage 1 \
	pred_nb11_back 30 \
	pred_alpha_back 10 \
	pred_n_notor_back 5 \
	pred_bys_back 5 \
	pred_pb_back 3 \
	wet6.5 15  dry5 15 dry6.5 15 dry8 40 dry12 40 \
	phobic_fit 3 \
	sidechain 5 \
	n_ca_c	2 bad_peptide 5 \
	soft_clashes 100  backbone_clashes 10 \
	break 200  \
	hbond_geom 10 \
	hbond_geom_backbone 10 \
	hbond_geom_beta 20 \
	hbond_geom_beta_pair 40