// This is based on the CASP7 cost function, with some updates
//	to take advantage of new features.
// Weighting is rather arbitrary.
// 	I reduced soft_clashes, to keep from tearing apart nearly
//	right packing.  It needs to be gradually increased.

ConstraintSet try1.sheets
SheetConstraint (T0411)E93 (T0411)F96	(T0411)N118 (T0411)L121	hbond (T0411)F96	1
SheetConstraint (T0411)K92 (T0411)Y97	(T0411)N40 (T0411)D45	hbond (T0411)Y97	1
SheetConstraint (T0411)L43 (T0411)V46	(T0411)S60 (T0411)V63	hbond (T0411)D45	1

ConstraintSet try1.helices
# I'm a bit dubious about this first helix
# HelixConstraint (T0411)M1	(T0411)W9

HelixConstraint (T0411)S26	(T0411)K36
HelixConstraint (T0411)P76	(T0411)Q82
HelixConstraint (T0411)K102	(T0411)G115
HelixConstraint (T0411)G124	(T0411)H132

ConstraintSet extra_strand

SheetConstraint N21	Y25	N118	Y122	Hbond T119

SetCost \
	align_constraints 20 \
	try1.sheets 5 \
	try1.helices 5 \
	extra_strand 5 \
	nn1000 1 \
	two_stage 1 \
	pred_nb11_back 30 \
	pred_alpha_back 10 \
	pred_n_notor_back 5 \
	pred_bys_back 5 \
	pred_pb_back 3 \
	wet6.5 15  dry5 15 dry6.5 15 dry8 40 dry12 40 \
	phobic_fit 3 \
	sidechain 5 \
	n_ca_c	2 bad_peptide 5 \
	soft_clashes 150  backbone_clashes 10 \
	break 250  \
	hbond_geom 10 \
	hbond_geom_backbone 10 \
	hbond_geom_beta 20 \
	hbond_geom_beta_pair 40