# List of top-scoring protein chains for t2k-w0.5-1-str4-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2hhgA 139 1.46e-13 1e0cA 271 7.26e-13 c.46.1.2,c.46.1.2 32717,32718 1rhsA 296 1.10e-12 c.46.1.2,c.46.1.2 32703,32704 1gmxA 108 2.33e-12 c.46.1.3 65355 1rhs 296 3.30e-12 1yt8A 539 5.49e-12 c.46.1.2,c.46.1.2,c.46.1.2,c.46.1.2 123996,123997,123998,123999 1t3kA 152 9.22e-12 c.46.1.1 106357 2fsxA 148 1.13e-11 2eg4A 230 1.30e-11 1uarA 285 2.39e-11 c.46.1.2,c.46.1.2 107762,107763 1c25 161 5.90e-11 1qb0A 211 8.36e-11 c.46.1.1 32699 2a2kA 175 2.49e-10 1ymkA 175 3.13e-10 c.46.1.1 123699 1okgA 373 1.56e-09 c.46.1.2,c.46.1.2,d.26.1.3 93250,93251,93252 1wv9A 94 3.68e-09 1hzmA 154 1.33e-06 c.46.1.1 65975 2oucA 142 1.89e-06 2j6pA 152 1.59e-05 2gwfA 157 0.001698 c.46.1.4 135802 1whbA 157 0.6659 c.46.1.4 114639 1oywA 523 0.9633 a.4.5.43,c.37.1.19,c.37.1.19 93760,93761,93762 1x24A 180 1.688 1jztA 246 2.158 c.104.1.1 63319 1zckA 154 2.571 1rxdA 159 3.436 c.45.1.1 111959 1tf5A 844 3.480 a.162.1.1,a.172.1.1,c.37.1.19,c.37.1.19 106834,106835,106836,106837 2f46A 156 6.594 2b4pA 334 6.603 2c5sA 413 6.646 c.26.2.6,d.308.1.1 129950,129951 2scuA 288 7.365 c.2.1.8,c.23.4.1 30303,31131 1fukA 165 7.883 c.37.1.19 32409 2e0tA 151 8.254 1npyA 271 8.550 c.2.1.7,c.58.1.5 85995,85996 2hmaA 376 8.593 1wrmA 165 9.045 1yz4A 160 9.437 1yzhA 214 9.710 c.66.1.53 124277 2i4iA 417 9.95 2b4uA 335 10.09 1zzwA 149 10.29 2c46A 241 10.76 2f4dA 184 11.04 2o8nA 265 11.25 1ywfA 296 11.34 c.45.1.5 124144 1vl2A 421 11.49 c.26.2.1,d.210.1.1 108708,108709 1bykA 255 12.37 c.93.1.1 35706 2hcrA 326 12.57 2hcmA 164 13.47 2v1xA 591 15.74 2i6jA 161 16.42 3ca8A 266 16.67 1i24A 404 17.10 c.2.1.2 83663 1hv8A 367 17.44 c.37.1.19,c.37.1.19 32405,32406 2hxpA 155 17.62 1gpmA 525 17.92 c.23.16.1,c.26.2.1,d.52.2.1 31405,31608,38826 1i2cA 404 18.59 c.2.1.2 83666 1zclA 180 19.30 1vhrA 184 19.52 c.45.1.1 32651 1d5rA 324 22.70 b.7.1.1,c.45.1.1 23181,32697 2cftA 298 23.88 1nxzA 246 24.41 b.122.1.2,c.116.1.5 86391,86392 2q1sA 377 24.81 1eyzA 392 25.67 b.84.2.1,c.30.1.1,d.142.1.2 28246,31653,41498 2j16A 182 25.70 2nloA 302 25.73 1ru8A 232 26.53 c.26.2.1 97849 2dm6A 333 27.60 b.35.1.2,c.2.1.1 131567,131568 2fcaA 213 27.98 c.66.1.53 133262 1y1pA 342 29.08 c.2.1.2 122550 1yksA 440 30.33 c.37.1.14,c.37.1.14 123561,123562 2nt2A 145 31.27 1gph1 465 31.45 2yxeA 215 31.98 2esbA 188 33.52 1sb8A 352 33.90 c.2.1.2 105410 1yb5A 351 34.32 b.35.1.2,c.2.1.1 116601,116602 2yzkA 178 34.43 2yxbA 161 34.74 2imgA 151 35.44 1vjrA 271 35.97 c.108.1.14 100832 1hwxA 501 36.21 c.2.1.7,c.58.1.1 30250,33898 1i9sA 210 36.85 c.45.1.1 62099 1ez1A 392 38.17 b.84.2.1,c.30.1.1,d.142.1.2 28248,31655,41500 2db3A 434 38.31 1x6vA 630 39.54 b.122.1.3,c.26.1.5,c.37.1.4 121755,121756,121757 1t5iA 172 39.55 c.37.1.19 106450 1scuA 288 40.70 c.2.1.8,c.23.4.1 30307,31135 2p4dA 172 41.04 1vhyA 257 42.24 b.122.1.2,c.116.1.5 100714,100715 2hoqA 241 44.45 1ao0A 459 44.60 c.61.1.1,d.153.1.1 34049,41816 1npdA 288 44.65 c.2.1.7,c.58.1.5 80681,80682 1u7pA 164 45.01 c.108.1.17 113095 1dkuA 317 45.50 c.61.1.2,c.61.1.2 34118,34119 1yn9A 169 46.27 2va8A 715 47.28 2aeeA 211 48.24 c.61.1.1 126620 1rkxA 357 48.47 c.2.1.2 97631 1fdr 248 48.56 2hjvA 163 48.80 2d5cA 263 51.74 2oycA 306 52.81 2eggA 297 53.72 1eo1A 124 54.29 c.55.5.1 33739 2bmfA 451 54.51 c.37.1.14,c.37.1.14 128791,128792 2vq3A 215 54.77 1ym3A 215 54.84 1o5oA 221 55.41 c.61.1.1 92509 1n7hA 381 55.71 c.2.1.2 80250 2jbhA 225 55.85 1jsxA 207 56.02 c.66.1.20 71846 1swvA 267 56.61 c.108.1.3 112134 2p4hX 322 59.16 1bvyF 191 59.45 c.23.5.1 31207 1fsgA 233 59.49 c.61.1.1 34029 2z1mA 345 59.82 2c5aA 379 61.29 c.2.1.2 129894 1dbrA 231 67.06 c.61.1.1 34041 1d7uA 433 67.08 c.67.1.4 34439 2r6jA 318 67.67 2dy0A 190 68.87 1kjqA 391 69.41 b.84.2.1,c.30.1.1,d.142.1.2 72616,72617,72618 2h4vA 320 69.83 2hi0A 240 70.03 1nriA 306 70.44 c.80.1.3 86123 2pfuA 99 71.09 1xgkA 352 71.43 c.2.1.2 115286 1vi2A 300 71.89 c.2.1.7,c.58.1.5 100726,100727 1fezA 256 73.99 c.108.1.3 43343 1m6nA 802 74.48 a.162.1.1,a.172.1.1,c.37.1.19,c.37.1.19 78697,78698,78699,78700 1bncA 449 74.93 b.84.2.1,c.30.1.1,d.142.1.2 28236,31643,41488 2i1yA 301 77.63 2hk9A 275 77.63 2j4jA 226 79.20 1oheA 348 80.64 c.45.1.1,c.45.1.1 87013,87014 1hgxA 183 81.01 c.61.1.1 34027 3b5vA 248 81.26 2dplA 308 83.67 2hdoA 209 83.79 c.108.1.6 136345 1vkrA 125 84.07 c.44.2.1 108689 1y80A 210 84.26 1orrA 347 84.65 c.2.1.2 93460 1wd5A 208 84.79 c.61.1.1 114524 1heiA 451 84.91 c.37.1.14,c.37.1.14 32463,32464 2oc3A 303 85.18 1t9hA 307 85.20 b.40.4.5,c.37.1.8 112358,112359 1fpzA 212 85.84 c.45.1.1 59976 1oi7A 288 87.43 c.2.1.8,c.23.4.1 87049,87050 1ryiA 382 87.75 c.3.1.2,d.16.1.3 118813,118814