# List of top-scoring protein chains for t2k-w0.5-1-str2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2hhgA 139 3.68e-12 1e0cA 271 1.25e-11 c.46.1.2,c.46.1.2 32717,32718 1rhsA 296 2.48e-11 c.46.1.2,c.46.1.2 32703,32704 1gmxA 108 5.84e-11 c.46.1.3 65355 1rhs 296 6.36e-11 1yt8A 539 9.57e-11 c.46.1.2,c.46.1.2,c.46.1.2,c.46.1.2 123996,123997,123998,123999 2fsxA 148 1.57e-10 1uarA 285 1.85e-10 c.46.1.2,c.46.1.2 107762,107763 2eg4A 230 2.23e-10 1t3kA 152 2.59e-10 c.46.1.1 106357 1qb0A 211 1.07e-09 c.46.1.1 32699 1c25 161 1.40e-09 2a2kA 175 2.99e-09 1ymkA 175 3.28e-09 c.46.1.1 123699 1okgA 373 1.69e-08 c.46.1.2,c.46.1.2,d.26.1.3 93250,93251,93252 1wv9A 94 2.55e-08 1hzmA 154 6.11e-06 c.46.1.1 65975 2oucA 142 9.43e-06 2j6pA 152 5.44e-05 2gwfA 157 0.006023 c.46.1.4 135802 1whbA 157 1.606 c.46.1.4 114639 1oywA 523 2.176 a.4.5.43,c.37.1.19,c.37.1.19 93760,93761,93762 1x24A 180 3.290 1jztA 246 4.523 c.104.1.1 63319 1zckA 154 5.197 1tf5A 844 5.425 a.162.1.1,a.172.1.1,c.37.1.19,c.37.1.19 106834,106835,106836,106837 1rxdA 159 5.520 c.45.1.1 111959 2hmaA 376 8.285 1wrmA 165 8.522 1yzhA 214 8.712 c.66.1.53 124277 2i4iA 417 9.523 1zzwA 149 9.635 2hxpA 155 9.721 2v1xA 591 9.945 2b4pA 334 10.03 2scuA 288 10.54 c.2.1.8,c.23.4.1 30303,31131 1yz4A 160 11.21 2c5sA 413 11.35 c.26.2.6,d.308.1.1 129950,129951 2b4uA 335 12.08 1ywfA 296 12.24 c.45.1.5 124144 1fukA 165 13.09 c.37.1.19 32409 2c46A 241 13.15 2hcrA 326 14.29 2hcmA 164 15.01 2f4dA 184 15.08 2j16A 182 15.21 1vl2A 421 15.75 c.26.2.1,d.210.1.1 108708,108709 2o8nA 265 16.13 1npyA 271 16.25 c.2.1.7,c.58.1.5 85995,85996 2f46A 156 16.60 1i2cA 404 16.86 c.2.1.2 83666 1i24A 404 17.19 c.2.1.2 83663 2q1sA 377 17.51 1ru8A 232 17.56 c.26.2.1 97849 2e0tA 151 18.13 1hv8A 367 19.68 c.37.1.19,c.37.1.19 32405,32406 1zclA 180 20.18 1vhrA 184 20.33 c.45.1.1 32651 2esbA 188 20.49 2yxbA 161 21.18 2nt2A 145 22.44 2dm6A 333 23.56 b.35.1.2,c.2.1.1 131567,131568 1i9sA 210 24.71 c.45.1.1 62099 2p4dA 172 25.07 2imgA 151 25.53 1yb5A 351 26.14 b.35.1.2,c.2.1.1 116601,116602 1d5rA 324 27.98 b.7.1.1,c.45.1.1 23181,32697 1bykA 255 29.11 c.93.1.1 35706 1gpmA 525 29.77 c.23.16.1,c.26.2.1,d.52.2.1 31405,31608,38826 2i6jA 161 30.94 1eyzA 392 32.12 b.84.2.1,c.30.1.1,d.142.1.2 28246,31653,41498 2eggA 297 32.95 2h4vA 320 33.57 1jvbA 347 34.96 b.35.1.2,c.2.1.1 77181,77182 2j3hA 345 36.31 3ca8A 266 36.42 2yzkA 178 37.81 1dkuA 317 38.06 c.61.1.2,c.61.1.2 34118,34119 1gph1 465 38.13 2db3A 434 38.87 2cftA 298 39.84 2fcaA 213 41.88 c.66.1.53 133262 1y1pA 342 41.94 c.2.1.2 122550 2hoqA 241 42.04 1yn9A 169 42.65 1sb8A 352 43.07 c.2.1.2 105410 2yxeA 215 43.78 1ez1A 392 44.39 b.84.2.1,c.30.1.1,d.142.1.2 28248,31655,41500 1dbrA 231 50.01 c.61.1.1 34041 1eo1A 124 50.61 c.55.5.1 33739 2jbhA 225 51.54 1rkxA 357 52.17 c.2.1.2 97631 2c0cA 362 53.60 1ao0A 459 53.89 c.61.1.1,d.153.1.1 34049,41816 1u7pA 164 55.58 c.108.1.17 113095 1npdA 288 55.69 c.2.1.7,c.58.1.5 80681,80682 2va8A 715 55.88 2i1yA 301 56.04 1hwxA 501 56.10 c.2.1.7,c.58.1.1 30250,33898 1nxzA 246 57.53 b.122.1.2,c.116.1.5 86391,86392 1scuA 288 57.59 c.2.1.8,c.23.4.1 30307,31135 2p4hX 322 58.02 2nloA 302 60.60 1w96A 554 60.84 b.84.2.1,c.30.1.1,d.142.1.2 114397,114398,114399 2oc3A 303 61.83 1wd5A 208 62.40 c.61.1.1 114524 1x6vA 630 63.76 b.122.1.3,c.26.1.5,c.37.1.4 121755,121756,121757 2hjvA 163 64.07 5nul 138 64.30 2d5cA 263 64.53 1oheA 348 64.81 c.45.1.1,c.45.1.1 87013,87014 1rdfA 267 65.29 c.108.1.3 104884 1n7hA 381 65.32 c.2.1.2 80250 1swvA 267 65.42 c.108.1.3 112134 1t5iA 172 66.08 c.37.1.19 106450 1bvyF 191 66.40 c.23.5.1 31207 2hi0A 240 66.64 1fpzA 212 68.19 c.45.1.1 59976 1jsxA 207 68.63 c.66.1.20 71846 1a3cA 181 69.65 c.61.1.1 34095 1fezA 256 69.89 c.108.1.3 43343 2vq3A 215 70.35 1hgxA 183 70.66 c.61.1.1 34027 1fdr 248 71.45 2pzmA 330 71.54 2yvlA 248 72.95 2yv1A 294 73.33 1j7jA 178 73.73 c.61.1.1 84131 1igs 248 76.67 1ptvA 321 77.08 c.45.1.2 32665 2dy0A 190 77.41 1tvmA 113 77.79 2hcyA 347 78.32 1rpmA 278 78.79 c.45.1.2 32679 1ym3A 215 78.90 1oi7A 288 79.84 c.2.1.8,c.23.4.1 87049,87050 2r6jA 318 82.10 2yrxA 451 83.73 1vi2A 300 83.86 c.2.1.7,c.58.1.5 100726,100727 1d7uA 433 86.03 c.67.1.4 34439 2bijA 305 87.14 1xgkA 352 87.39 c.2.1.2 115286 1vkrA 125 88.28 c.44.2.1 108689 2hdoA 209 88.43 c.108.1.6 136345 3b5vA 248 88.98