# List of top-scoring protein chains for t2k-w0.5-1-o_sep-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2hhgA 139 2.90e-12 1e0cA 271 1.64e-11 c.46.1.2,c.46.1.2 32717,32718 1rhsA 296 2.14e-11 c.46.1.2,c.46.1.2 32703,32704 1gmxA 108 2.43e-11 c.46.1.3 65355 1yt8A 539 4.42e-11 c.46.1.2,c.46.1.2,c.46.1.2,c.46.1.2 123996,123997,123998,123999 1rhs 296 6.96e-11 2fsxA 148 9.75e-11 2eg4A 230 1.08e-10 1t3kA 152 2.60e-10 c.46.1.1 106357 1c25 161 4.80e-10 1uarA 285 4.82e-10 c.46.1.2,c.46.1.2 107762,107763 1qb0A 211 9.32e-10 c.46.1.1 32699 2a2kA 175 2.48e-09 1ymkA 175 3.14e-09 c.46.1.1 123699 1okgA 373 1.39e-08 c.46.1.2,c.46.1.2,d.26.1.3 93250,93251,93252 1wv9A 94 4.52e-08 1hzmA 154 7.02e-06 c.46.1.1 65975 2oucA 142 1.53e-05 2j6pA 152 0.000109 2gwfA 157 0.02586 c.46.1.4 135802 1oywA 523 4.039 a.4.5.43,c.37.1.19,c.37.1.19 93760,93761,93762 1x24A 180 4.916 1zckA 154 6.010 1jztA 246 6.438 c.104.1.1 63319 1whbA 157 7.937 c.46.1.4 114639 1tf5A 844 8.001 a.162.1.1,a.172.1.1,c.37.1.19,c.37.1.19 106834,106835,106836,106837 1rxdA 159 9.051 c.45.1.1 111959 1npyA 271 10.04 c.2.1.7,c.58.1.5 85995,85996 2scuA 288 10.42 c.2.1.8,c.23.4.1 30303,31131 2hcrA 326 12.01 1fukA 165 13.51 c.37.1.19 32409 2f46A 156 14.83 2b4pA 334 19.52 2i4iA 417 19.76 1yzhA 214 20.74 c.66.1.53 124277 1elqA 390 22.02 c.67.1.3 34436 1zzwA 149 22.67 2e0tA 151 23.31 1t5iA 172 25.64 c.37.1.19 106450 1npdA 288 26.78 c.2.1.7,c.58.1.5 80681,80682 2cftA 298 27.16 2va8A 715 27.58 2nloA 302 27.74 1jvbA 347 28.05 b.35.1.2,c.2.1.1 77181,77182 1i2cA 404 29.22 c.2.1.2 83666 2c5sA 413 29.37 c.26.2.6,d.308.1.1 129950,129951 1bykA 255 29.77 c.93.1.1 35706 2o8nA 265 31.17 1i24A 404 33.32 c.2.1.2 83663 2oycA 306 34.20 2b4uA 335 37.18 2q1sA 377 38.20 2hxpA 155 38.34 1dkuA 317 39.24 c.61.1.2,c.61.1.2 34118,34119 2c46A 241 40.59 1vi2A 300 42.81 c.2.1.7,c.58.1.5 100726,100727 2v1xA 591 43.26 1wrmA 165 44.58 2f4dA 184 45.96 1yb5A 351 47.93 b.35.1.2,c.2.1.1 116601,116602 2hjvA 163 50.00 1d5rA 324 50.31 b.7.1.1,c.45.1.1 23181,32697 2hmaA 376 51.52 1yz4A 160 52.53 1vjrA 271 52.69 c.108.1.14 100832 1vl2A 421 52.73 c.26.2.1,d.210.1.1 108708,108709 2i6jA 161 53.66 2d5cA 263 56.12 1ve5A 311 56.56 c.79.1.1 120013 2hcmA 164 56.58 2p4dA 172 59.76 1ru8A 232 59.79 c.26.2.1 97849 1nxzA 246 62.69 b.122.1.2,c.116.1.5 86391,86392 1y1pA 342 63.43 c.2.1.2 122550 1ywfA 296 63.87 c.45.1.5 124144 1zclA 180 66.98 1odkA 235 67.27 c.56.2.1 86863 1oi7A 288 67.35 c.2.1.8,c.23.4.1 87049,87050 2dm6A 333 68.32 b.35.1.2,c.2.1.1 131567,131568 2yxbA 161 69.40 1gph1 465 69.44 1hv8A 367 71.22 c.37.1.19,c.37.1.19 32405,32406 1rkxA 357 72.74 c.2.1.2 97631 1vhrA 184 73.43 c.45.1.1 32651 2fk8A 318 74.19 c.66.1.18 133648 1ym3A 215 74.34 1gpmA 525 74.43 c.23.16.1,c.26.2.1,d.52.2.1 31405,31608,38826 1qorA 327 75.72 b.35.1.2,c.2.1.1 24766,29782 1rpmA 278 75.75 c.45.1.2 32679 1i9sA 210 77.34 c.45.1.1 62099 1p5jA 372 78.21 c.79.1.1 104067 2eggA 297 80.03 1kpgA 287 80.58 c.66.1.18 68735 2rdmA 132 81.16 1z7wA 322 81.72 c.79.1.1 124674 2esbA 188 81.92 1scuA 288 82.17 c.2.1.8,c.23.4.1 30307,31135 1n8kA 374 84.23 b.35.1.2,c.2.1.1 80298,80299 2hoqA 241 85.09 1yn9A 169 85.19 2j16A 182 86.47 1ao0A 459 87.86 c.61.1.1,d.153.1.1 34049,41816 1lt3A 240 89.15 d.166.1.1 42230