# List of top-scoring protein chains for t2k-w0.5-1-n_sep-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2hhgA 139 2.85e-12 1e0cA 271 8.65e-12 c.46.1.2,c.46.1.2 32717,32718 1rhsA 296 1.43e-11 c.46.1.2,c.46.1.2 32703,32704 1rhs 296 2.87e-11 1yt8A 539 3.49e-11 c.46.1.2,c.46.1.2,c.46.1.2,c.46.1.2 123996,123997,123998,123999 1gmxA 108 4.01e-11 c.46.1.3 65355 2eg4A 230 6.83e-11 2fsxA 148 1.41e-10 1t3kA 152 3.12e-10 c.46.1.1 106357 1uarA 285 3.90e-10 c.46.1.2,c.46.1.2 107762,107763 1c25 161 8.23e-10 1qb0A 211 1.13e-09 c.46.1.1 32699 2a2kA 175 3.24e-09 1ymkA 175 3.81e-09 c.46.1.1 123699 1okgA 373 5.74e-09 c.46.1.2,c.46.1.2,d.26.1.3 93250,93251,93252 1wv9A 94 3.20e-08 1hzmA 154 4.14e-06 c.46.1.1 65975 2oucA 142 1.49e-05 2j6pA 152 9.88e-05 2gwfA 157 0.01213 c.46.1.4 135802 1whbA 157 2.496 c.46.1.4 114639 1oywA 523 2.798 a.4.5.43,c.37.1.19,c.37.1.19 93760,93761,93762 1jztA 246 3.607 c.104.1.1 63319 1x24A 180 4.426 1zckA 154 6.363 1tf5A 844 7.523 a.162.1.1,a.172.1.1,c.37.1.19,c.37.1.19 106834,106835,106836,106837 1rxdA 159 9.216 c.45.1.1 111959 1fukA 165 9.821 c.37.1.19 32409 2f46A 156 10.84 2hcrA 326 12.17 2v1xA 591 13.01 2c5sA 413 13.19 c.26.2.6,d.308.1.1 129950,129951 2scuA 288 16.51 c.2.1.8,c.23.4.1 30303,31131 1bykA 255 17.84 c.93.1.1 35706 3ca8A 266 18.38 2hmaA 376 18.67 1ywfA 296 18.97 c.45.1.5 124144 1npyA 271 19.51 c.2.1.7,c.58.1.5 85995,85996 1zzwA 149 21.06 1wrmA 165 22.45 2b4pA 334 22.51 2e0tA 151 23.53 2f4dA 184 25.15 1vl2A 421 26.56 c.26.2.1,d.210.1.1 108708,108709 1npdA 288 27.19 c.2.1.7,c.58.1.5 80681,80682 2nloA 302 29.61 1yz4A 160 30.35 2i4iA 417 30.55 2o8nA 265 30.59 1ru8A 232 31.15 c.26.2.1 97849 1i2cA 404 31.76 c.2.1.2 83666 1yzhA 214 32.10 c.66.1.53 124277 1vi2A 300 32.55 c.2.1.7,c.58.1.5 100726,100727 2i6jA 161 33.63 2b4uA 335 34.22 2hcmA 164 34.68 2hxpA 155 35.85 1odkA 235 37.86 c.56.2.1 86863 1i24A 404 39.62 c.2.1.2 83663 1vhrA 184 40.35 c.45.1.1 32651 2q1sA 377 40.39 2j4jA 226 41.26 2hjvA 163 42.30 1zclA 180 45.83 1d5rA 324 48.24 b.7.1.1,c.45.1.1 23181,32697 2c46A 241 50.77 2yzkA 178 50.86 1elqA 390 51.42 c.67.1.3 34436 1gpmA 525 57.01 c.23.16.1,c.26.2.1,d.52.2.1 31405,31608,38826 1dkuA 317 57.80 c.61.1.2,c.61.1.2 34118,34119 1igs 248 58.30 1jvbA 347 59.83 b.35.1.2,c.2.1.1 77181,77182 2nt2A 145 61.73 1eyzA 392 63.32 b.84.2.1,c.30.1.1,d.142.1.2 28246,31653,41498 1sb8A 352 63.85 c.2.1.2 105410 1gph1 465 65.86 1ym3A 215 66.35 2dm6A 333 69.05 b.35.1.2,c.2.1.1 131567,131568 1qorA 327 69.65 b.35.1.2,c.2.1.1 24766,29782 1yb5A 351 69.77 b.35.1.2,c.2.1.1 116601,116602 2c0cA 362 69.79 1fsgA 233 71.32 c.61.1.1 34029 2p4dA 172 71.41 2j16A 182 71.46 2yxbA 161 72.27 1nxzA 246 73.54 b.122.1.2,c.116.1.5 86391,86392 1ao0A 459 73.96 c.61.1.1,d.153.1.1 34049,41816 2esbA 188 78.39 2yxeA 215 79.95 2aeeA 211 80.87 c.61.1.1 126620 2imgA 151 81.87 2d5cA 263 83.80 1y1pA 342 84.04 c.2.1.2 122550 5nul 138 85.80 1ez1A 392 87.37 b.84.2.1,c.30.1.1,d.142.1.2 28248,31655,41500 2qipA 165 88.22 1rkxA 357 88.63 c.2.1.2 97631