# List of top-scoring protein chains for t2k-w0.5-1-n_notor2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2hhgA 139 7.93e-15 1e0cA 271 1.29e-14 c.46.1.2,c.46.1.2 32717,32718 1rhsA 296 3.11e-14 c.46.1.2,c.46.1.2 32703,32704 1gmxA 108 1.04e-13 c.46.1.3 65355 1rhs 296 2.30e-13 1yt8A 539 2.32e-13 c.46.1.2,c.46.1.2,c.46.1.2,c.46.1.2 123996,123997,123998,123999 2eg4A 230 3.63e-13 2fsxA 148 6.17e-13 1t3kA 152 1.26e-12 c.46.1.1 106357 1uarA 285 5.05e-12 c.46.1.2,c.46.1.2 107762,107763 1c25 161 5.26e-12 1qb0A 211 5.67e-12 c.46.1.1 32699 2a2kA 175 1.47e-11 1ymkA 175 3.10e-11 c.46.1.1 123699 1okgA 373 7.64e-11 c.46.1.2,c.46.1.2,d.26.1.3 93250,93251,93252 1wv9A 94 7.55e-10 1hzmA 154 1.34e-08 c.46.1.1 65975 2oucA 142 1.19e-06 2j6pA 152 1.43e-05 2gwfA 157 0.004741 c.46.1.4 135802 1whbA 157 1.829 c.46.1.4 114639 1ywfA 296 2.187 c.45.1.5 124144 2v1xA 591 2.785 1x24A 180 2.955 1jztA 246 3.027 c.104.1.1 63319 2eihA 343 3.855 1jvbA 347 4.174 b.35.1.2,c.2.1.1 77181,77182 2scuA 288 4.810 c.2.1.8,c.23.4.1 30303,31131 2p4dA 172 5.110 2fcaA 213 5.709 c.66.1.53 133262 1zckA 154 6.317 1oywA 523 6.391 a.4.5.43,c.37.1.19,c.37.1.19 93760,93761,93762 1rxdA 159 6.400 c.45.1.1 111959 3ca8A 266 6.892 2vq3A 215 7.275 2f46A 156 7.477 1u24A 337 8.171 c.45.1.4 112968 2hmaA 376 8.388 1pjrA 724 9.076 c.37.1.19,c.37.1.19 32391,32392 1wlyA 333 9.664 1tf5A 844 10.59 a.162.1.1,a.172.1.1,c.37.1.19,c.37.1.19 106834,106835,106836,106837 1sffA 426 12.65 c.67.1.4 105482 2dt8A 280 13.01 2j13A 247 14.85 c.6.2.3 137934 1qorA 327 15.96 b.35.1.2,c.2.1.1 24766,29782 1yzhA 214 16.01 c.66.1.53 124277 1yz4A 160 16.07 2c46A 241 16.19 1auoA 218 16.72 c.69.1.14 34716 3bt7A 369 16.83 1nxzA 246 17.02 b.122.1.2,c.116.1.5 86391,86392 2b4uA 335 17.62 2v3aA 384 18.97 2aeeA 211 19.32 c.61.1.1 126620 1d7uA 433 19.62 c.67.1.4 34439 2ax3A 502 19.80 c.72.1.4,c.104.1.1 127477,127478 1zzwA 149 21.09 1t5iA 172 21.19 c.37.1.19 106450 1wrmA 165 21.51 2f4dA 184 21.96 1eudA 311 22.46 c.2.1.8,c.23.4.1 30312,31140 1vhrA 184 22.82 c.45.1.1 32651 1hg3A 225 23.01 c.1.1.1 61025 1nuiA 255 23.33 e.13.1.2,g.41.3.2 86194,86195 1pzxA 289 23.44 c.119.1.1 95484 2cfmA 561 23.64 2e0tA 151 24.17 1lt3A 240 24.27 d.166.1.1 42230 2b34A 199 26.14 1pydA 556 27.03 c.31.1.3,c.36.1.5,c.36.1.9 31735,31773,31774 1d5rA 324 27.87 b.7.1.1,c.45.1.1 23181,32697 2hxpA 155 28.15 1e5xA 486 28.89 c.79.1.1 59283 2j16A 182 29.43 2j4jA 226 30.07 2aamA 309 32.08 c.1.8.15 126489 1pvdA 537 32.56 c.31.1.3,c.36.1.5,c.36.1.9 31737,31777,31778 1ekjA 221 32.66 c.53.2.1 33364 1p57A 114 33.99 d.170.1.2 94125 2i6jA 161 34.03 2p1zA 180 34.03 2fncA 381 34.11 1nhp 447 34.47 1wxxA 382 35.30 b.122.1.9,c.66.1.51 121418,121419 2cftA 298 36.47 1yzvA 204 36.81 2hcmA 164 37.20 2yzkA 178 37.88 2cunA 410 38.82 2db3A 434 38.85 1rkxA 357 39.16 c.2.1.2 97631 3clwA 507 40.18 1brmA 367 41.16 c.2.1.3,d.81.1.1 30030,39945 2yv1A 294 41.25 1qpbA 563 41.37 c.31.1.3,c.36.1.5,c.36.1.9 31739,31781,31782 1yb5A 351 41.48 b.35.1.2,c.2.1.1 116601,116602 2elcA 329 41.54 1zfjA 491 42.23 c.1.5.1,d.37.1.1,d.37.1.1 28638,38540,38541 1ym3A 215 45.07 2i4iA 417 45.62 2bjhA 260 46.65 1ct9A 553 47.30 c.26.2.1,d.153.1.1 31616,41834 2a67A 167 47.31 1nrfA 262 47.45 e.3.1.1 92086 2hrzA 342 50.54 3tmkA 216 50.86 c.37.1.1 31920 2h4vA 320 51.15 1t1iA 364 51.35 c.41.1.2 106248 1a53 247 51.47 2nt0A 497 52.05 b.71.1.2,c.1.8.3 138561,138562 2c5sA 413 52.97 c.26.2.6,d.308.1.1 129950,129951 1ex0A 731 53.13 b.1.18.9,b.1.5.1,b.1.5.1,d.3.1.4 90465,90466,90467,90468 1mb3A 124 54.09 c.23.1.1 78907 1wdpA 495 54.72 c.1.8.1 120907 1p15A 253 55.23 c.45.1.2 93894 1vmeA 410 55.43 c.23.5.1,d.157.1.3 108893,108894 1gc5A 467 55.66 c.72.1.3 60429 1a88A 275 55.66 c.69.1.12 34707 1igs 248 56.60 2c0cA 362 57.00 1vdeA 454 57.19 b.86.1.2,d.95.2.2,d.95.2.2 28378,40581,40582 1pswA 348 57.44 c.87.1.7 88287 1po0A 751 57.55 f.4.3.3 94960 5nul 138 58.07 1pjr 724 58.41 1i9sA 210 59.32 c.45.1.1 62099 2yxeA 215 59.87 1a53A 247 60.00 c.1.2.4 28564 1fsgA 233 60.25 c.61.1.1 34029 1kijA 390 61.98 d.14.1.3,d.122.1.2 72514,72515 2yxbA 161 62.45 1tzzA 392 62.66 c.1.11.2,d.54.1.1 112896,112897 1elqA 390 64.35 c.67.1.3 34436 1jvsA 400 64.46 a.69.3.1,c.2.1.3,d.81.1.3 77187,77188,77189 1jayA 212 65.54 c.2.1.6 66478 3bf7A 255 65.87 1y5iA 1246 66.04 b.52.2.2,c.81.1.1 122639,122640 3b7fA 394 66.40 1qnaA 200 66.87 d.129.1.1,d.129.1.1 41226,41227 1p0fA 373 67.00 b.35.1.2,c.2.1.1 87642,87643 1reoA 486 67.05 c.3.1.2,d.16.1.5 97325,97326 1rxwA 336 67.54 a.60.7.1,c.120.1.2 98059,98060 2nloA 302 68.61 2imgA 151 68.87 1yn9A 169 69.01 1c7sA 858 69.15 b.1.18.2,b.2.2.3,c.1.8.6,d.92.2.1 21812,22408,29011,40410 2b69A 343 69.46 c.2.1.2 127974 3b5vA 248 69.87 2hu5A 582 70.74 b.69.7.2,c.69.1.33 136763,136764 2dy0A 190 71.58 1nbaA 264 73.20 c.33.1.3 31753 1qba 858 73.35 1yksA 440 74.30 c.37.1.14,c.37.1.14 123561,123562 2fk8A 318 74.77 c.66.1.18 133648 1bdfA 235 75.85 d.74.3.1,d.181.1.1 39727,42602 1dbrA 231 75.92 c.61.1.1 34041 2fbyA 205 76.90 1npyA 271 77.30 c.2.1.7,c.58.1.5 85995,85996 1tt7A 330 77.81 b.35.1.2,c.2.1.1 112623,112624 1vhyA 257 81.82 b.122.1.2,c.116.1.5 100714,100715 2cb4A 291 82.57 4cpvA 108 83.28 a.39.1.4 17198 2az4A 429 83.57 d.157.1.10 127597 2pn1A 331 83.72 1ru8A 232 83.85 c.26.2.1 97849 1vpdA 299 83.88 a.100.1.1,c.2.1.6 113951,113952 1wdeA 294 84.48 c.90.1.1 114534 1ebdA 455 85.06 c.3.1.5,c.3.1.5,d.87.1.1 30577,30578,40210 1ryiA 382 85.15 c.3.1.2,d.16.1.3 118813,118814 1pg4A 652 85.47 e.23.1.1 88067 1odkA 235 87.69 c.56.2.1 86863 1l5zA 155 88.36 c.23.1.1 77722 1cjcA 460 88.67 c.3.1.1,c.4.1.1 30319,30604 3c1oA 321 88.85 1kjqA 391 89.00 b.84.2.1,c.30.1.1,d.142.1.2 72616,72617,72618