# List of top-scoring protein chains for t2k-w0.5-1-bys-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2hhgA 139 9.83e-13 1e0cA 271 4.91e-12 c.46.1.2,c.46.1.2 32717,32718 1rhsA 296 7.41e-12 c.46.1.2,c.46.1.2 32703,32704 1gmxA 108 1.44e-11 c.46.1.3 65355 1rhs 296 1.98e-11 1yt8A 539 2.39e-11 c.46.1.2,c.46.1.2,c.46.1.2,c.46.1.2 123996,123997,123998,123999 2eg4A 230 4.78e-11 2fsxA 148 5.13e-11 1t3kA 152 1.06e-10 c.46.1.1 106357 1uarA 285 1.85e-10 c.46.1.2,c.46.1.2 107762,107763 1c25 161 3.59e-10 1qb0A 211 4.25e-10 c.46.1.1 32699 2a2kA 175 1.05e-09 1ymkA 175 1.35e-09 c.46.1.1 123699 1okgA 373 5.02e-09 c.46.1.2,c.46.1.2,d.26.1.3 93250,93251,93252 1wv9A 94 7.89e-09 2oucA 142 2.82e-06 1hzmA 154 6.25e-06 c.46.1.1 65975 2j6pA 152 5.93e-05 2gwfA 157 0.006324 c.46.1.4 135802 1whbA 157 0.8151 c.46.1.4 114639 1x24A 180 3.141 1oywA 523 3.404 a.4.5.43,c.37.1.19,c.37.1.19 93760,93761,93762 1jztA 246 4.768 c.104.1.1 63319 1zckA 154 4.961 1tf5A 844 5.411 a.162.1.1,a.172.1.1,c.37.1.19,c.37.1.19 106834,106835,106836,106837 1zzwA 149 5.960 1rxdA 159 6.168 c.45.1.1 111959 2f46A 156 6.601 2scuA 288 9.671 c.2.1.8,c.23.4.1 30303,31131 2v1xA 591 11.83 2c46A 241 12.34 1fukA 165 13.22 c.37.1.19 32409 1yz4A 160 14.92 1ywfA 296 15.21 c.45.1.5 124144 2e0tA 151 15.80 1npyA 271 16.05 c.2.1.7,c.58.1.5 85995,85996 2hcrA 326 16.25 1wrmA 165 17.58 2hcmA 164 18.01 2fk8A 318 18.41 c.66.1.18 133648 2hxpA 155 18.51 2f4dA 184 18.84 1yzhA 214 20.05 c.66.1.53 124277 2b4pA 334 21.23 2c5sA 413 21.88 c.26.2.6,d.308.1.1 129950,129951 2imgA 151 22.38 1zclA 180 22.41 2o8nA 265 22.57 1gpmA 525 22.58 c.23.16.1,c.26.2.1,d.52.2.1 31405,31608,38826 2i4iA 417 22.86 2bifA 469 22.92 c.37.1.7,c.60.1.4 31963,34009 2j4jA 226 23.42 2hmaA 376 23.98 1yn9A 169 27.19 1vhrA 184 27.20 c.45.1.1 32651 2cftA 298 27.39 1i2cA 404 28.22 c.2.1.2 83666 2va8A 715 28.59 1oheA 348 30.78 c.45.1.1,c.45.1.1 87013,87014 2i6jA 161 31.86 1i24A 404 33.36 c.2.1.2 83663 1vl2A 421 35.49 c.26.2.1,d.210.1.1 108708,108709 2p4dA 172 35.91 2b4uA 335 37.18 1ru8A 232 37.96 c.26.2.1 97849 1i9sA 210 39.44 c.45.1.1 62099 2nloA 302 39.71 1dkuA 317 40.41 c.61.1.2,c.61.1.2 34118,34119 2yxbA 161 42.34 2dm6A 333 44.02 b.35.1.2,c.2.1.1 131567,131568 1igs 248 44.35 1bykA 255 45.80 c.93.1.1 35706 1scuA 288 47.56 c.2.1.8,c.23.4.1 30307,31135 2esbA 188 48.13 1d5rA 324 51.62 b.7.1.1,c.45.1.1 23181,32697 1npdA 288 53.55 c.2.1.7,c.58.1.5 80681,80682 1yb5A 351 53.86 b.35.1.2,c.2.1.1 116601,116602 2yv1A 294 54.04 2nt2A 145 56.71 1hv8A 367 57.74 c.37.1.19,c.37.1.19 32405,32406 2hp1A 432 59.16 1eo1A 124 59.45 c.55.5.1 33739 1elqA 390 60.31 c.67.1.3 34436 1bjnA 360 61.45 c.67.1.4 34469 2dplA 308 62.36 2c0cA 362 63.86 1vi2A 300 64.42 c.2.1.7,c.58.1.5 100726,100727 1vimA 200 65.32 c.80.1.3 100758 2q1sA 377 65.49 1j7jA 178 68.42 c.61.1.1 84131 1oi7A 288 70.32 c.2.1.8,c.23.4.1 87049,87050 1sb8A 352 73.79 c.2.1.2 105410 1eyzA 392 74.99 b.84.2.1,c.30.1.1,d.142.1.2 28246,31653,41498 1fpzA 212 76.00 c.45.1.1 59976 2eo5A 419 76.13 2yzkA 178 76.35 1rkxA 357 76.72 c.2.1.2 97631 1xtcA 194 76.79 d.166.1.1 42259 2hjvA 163 78.24 2fcaA 213 79.35 c.66.1.53 133262 2j16A 182 79.63 1gph1 465 80.33 2j3hA 345 81.38 2e5fA 325 81.67 3b5vA 248 82.38 1u24A 337 82.92 c.45.1.4 112968 1dbrA 231 83.39 c.61.1.1 34041 1kpgA 287 83.82 c.66.1.18 68735 1hgxA 183 84.03 c.61.1.1 34027 1d7uA 433 84.71 c.67.1.4 34439 1l1eA 287 86.18 c.66.1.18 73454 1w23A 360 87.95 c.67.1.4 114088 1rpmA 278 88.12 c.45.1.2 32679 2oc3A 303 89.14 1wd5A 208 89.46 c.61.1.1 114524 2db3A 434 89.87