# List of top-scoring protein chains for t2k-w0.5-1-CB_burial_14_7-0.3-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2hhgA 139 4.59e-13 1gmxA 108 5.86e-12 c.46.1.3 65355 2fsxA 148 1.04e-11 1rhsA 296 1.40e-11 c.46.1.2,c.46.1.2 32703,32704 1e0cA 271 1.80e-11 c.46.1.2,c.46.1.2 32717,32718 1t3kA 152 3.13e-11 c.46.1.1 106357 1rhs 296 3.37e-11 1yt8A 539 4.29e-11 c.46.1.2,c.46.1.2,c.46.1.2,c.46.1.2 123996,123997,123998,123999 1uarA 285 1.70e-10 c.46.1.2,c.46.1.2 107762,107763 2eg4A 230 1.85e-10 1qb0A 211 4.46e-10 c.46.1.1 32699 1c25 161 7.43e-10 2a2kA 175 1.93e-09 1ymkA 175 2.15e-09 c.46.1.1 123699 1wv9A 94 1.67e-08 1okgA 373 6.60e-08 c.46.1.2,c.46.1.2,d.26.1.3 93250,93251,93252 2oucA 142 1.23e-06 1hzmA 154 1.15e-05 c.46.1.1 65975 2j6pA 152 2.30e-05 2gwfA 157 0.000737 c.46.1.4 135802 1whbA 157 0.05241 c.46.1.4 114639 2hcrA 326 3.975 1jztA 246 6.682 c.104.1.1 63319 2yzkA 178 7.592 1x24A 180 8.401 1gph1 465 9.800 1zckA 154 10.85 2f46A 156 12.88 1yzhA 214 17.29 c.66.1.53 124277 1zzwA 149 17.39 1npyA 271 18.04 c.2.1.7,c.58.1.5 85995,85996 1rxdA 159 18.12 c.45.1.1 111959 2aeeA 211 20.47 c.61.1.1 126620 1hg3A 225 20.64 c.1.1.1 61025 1dkuA 317 21.22 c.61.1.2,c.61.1.2 34118,34119 2hmaA 376 22.12 2imgA 151 25.53 1zclA 180 26.68 2oycA 306 28.32 2v1xA 591 29.26 1vdmA 153 35.37 c.61.1.1 119994 2cftA 298 36.51 2hxpA 155 39.32 2esbA 188 40.52 2nt2A 145 41.26 1u9yA 284 41.39 c.61.1.2,c.61.1.2 119655,119656 1a3cA 181 41.68 c.61.1.1 34095 2pzmA 330 42.14 2hcmA 164 42.70 1fsgA 233 43.64 c.61.1.1 34029 1n7hA 381 44.31 c.2.1.2 80250 2f4dA 184 44.64 1wrmA 165 45.92 1odkA 235 47.16 c.56.2.1 86863 1yn9A 169 48.36 1oroA 213 48.73 c.61.1.1 34093 2hrzA 342 49.63 1ao0A 459 50.24 c.61.1.1,d.153.1.1 34049,41816 1tca 317 50.90 2c46A 241 51.06 2p4dA 172 52.13 1vimA 200 52.62 c.80.1.3 100758 2ax3A 502 52.90 c.72.1.4,c.104.1.1 127477,127478 1j7jA 178 55.70 c.61.1.1 84131 2q1sA 377 56.66 2i6jA 161 57.67 2dplA 308 58.94 1dbrA 231 60.67 c.61.1.1 34041 1gdhA 320 60.68 c.2.1.4,c.23.12.1 30095,31355 1opr 213 61.82 2eggA 297 62.73 1eyzA 392 63.01 b.84.2.1,c.30.1.1,d.142.1.2 28246,31653,41498 1ecfA 504 64.96 c.61.1.1,d.153.1.1 34053,41820 1gpmA 525 67.50 c.23.16.1,c.26.2.1,d.52.2.1 31405,31608,38826 1vjrA 271 68.63 c.108.1.14 100832 1vhrA 184 69.06 c.45.1.1 32651 1o5oA 221 69.76 c.61.1.1 92509 2dy0A 190 70.84 1usgA 346 70.96 c.93.1.1 99864 3ca8A 266 72.04 1fpzA 212 72.34 c.45.1.1 59976 1bd3A 243 73.70 c.61.1.1 34098 2o8nA 265 74.62 2obnA 349 74.81 1sb8A 352 76.28 c.2.1.2 105410 2j16A 182 77.09 1cjbA 231 78.05 c.61.1.1 34079 2db3A 434 80.37 1yz4A 160 82.01 2c5aA 379 82.40 c.2.1.2 129894 1mx3A 347 84.44 c.2.1.4,c.23.12.1 79638,79639 1zoiA 276 84.51 2c5sA 413 85.27 c.26.2.6,d.308.1.1 129950,129951 1tcaA 317 85.97 c.69.1.17 34726 3clkA 290 88.42 1jeoA 180 89.41 c.80.1.3 66611