# List of top-scoring protein chains for t2k-w0.5-1-CB8-sep9-0.3-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2hhgA	139	9.93e-10		
1e0cA	271	2.15e-09	c.46.1.2,c.46.1.2	32717,32718
1rhsA	296	2.82e-09	c.46.1.2,c.46.1.2	32703,32704
1rhs	296	4.66e-09		
1gmxA	108	6.66e-09	c.46.1.3	65355
2fsxA	148	9.48e-09		
2eg4A	230	1.34e-08		
1yt8A	539	1.45e-08	c.46.1.2,c.46.1.2,c.46.1.2,c.46.1.2	123996,123997,123998,123999
1uarA	285	1.49e-08	c.46.1.2,c.46.1.2	107762,107763
1t3kA	152	1.75e-08	c.46.1.1	106357
1qb0A	211	9.20e-08	c.46.1.1	32699
1c25	161	1.94e-07		
1ymkA	175	3.57e-07	c.46.1.1	123699
2a2kA	175	4.42e-07		
1okgA	373	6.61e-07	c.46.1.2,c.46.1.2,d.26.1.3	93250,93251,93252
1wv9A	94	8.46e-07		
2oucA	142	7.06e-05		
1hzmA	154	0.000132	c.46.1.1	65975
2j6pA	152	0.000337		
2gwfA	157	0.02259	c.46.1.4	135802
1whbA	157	0.9555	c.46.1.4	114639
1x24A	180	8.925		
1yzhA	214	13.44	c.66.1.53	124277
1zckA	154	18.58		
1rxdA	159	20.53	c.45.1.1	111959
1jztA	246	23.61	c.104.1.1	63319
2fdxA	138	27.69	c.23.5.1	31192
2i6jA	161	28.50		
1zclA	180	29.42		
2fcaA	213	30.82	c.66.1.53	133262
1zzwA	149	32.18		
1vjrA	271	37.12	c.108.1.14	100832
1npyA	271	37.81	c.2.1.7,c.58.1.5	85995,85996
2p4dA	172	40.17		
1d5rA	324	40.75	b.7.1.1,c.45.1.1	23181,32697
2imgA	151	47.00		
2f46A	156	49.23		
1yz4A	160	50.26		
2hcrA	326	50.82		
1wrmA	165	50.98		
2bjhA	260	51.60		
2cftA	298	51.79		
2hxpA	155	52.82		
2f4dA	184	53.40		
1yn9A	169	53.49		
1gph1	465	53.93		
1bykA	255	55.39	c.93.1.1	35706
2j16A	182	55.74		
1tib	269	58.56		
5nulA	138	59.66	c.23.5.1	31191
1hg3A	225	59.87	c.1.1.1	61025
1vhrA	184	60.69	c.45.1.1	32651
5nul	138	62.09		
2hmaA	376	63.50		
3ca8A	266	64.04		
1oywA	523	65.93	a.4.5.43,c.37.1.19,c.37.1.19	93760,93761,93762
2j4jA	226	69.55		
1o5oA	221	71.14	c.61.1.1	92509
2c46A	241	72.03		
2esbA	188	73.77		
2plc	274	74.76		
2nt2A	145	75.31		
2e0tA	151	75.97		
1lgyA	269	78.63	c.69.1.17	34758
2hcmA	164	79.04		
2b4pA	334	79.80		
1fsgA	233	81.25	c.61.1.1	34029
2h4vA	320	81.47		
2pzmA	330	83.39		
2q1sA	377	87.94		
2d69A	430	89.57	c.1.14.1,d.58.9.1	131292,131293
2bmfA	451	89.89	c.37.1.14,c.37.1.14	128791,128792