# List of top-scoring protein chains for T0411.t06-w0.5 hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1uarA	285	3.37e-10	c.46.1.2,c.46.1.2	107762,107763
1urhA	280	1.49e-09	c.46.1.2,c.46.1.2	99829,99830
2hhgA	139	2.03e-09		
1rhdA	293	3.28e-09	c.46.1.2,c.46.1.2	32715,32716
1rhsA	296	3.31e-09	c.46.1.2,c.46.1.2	32703,32704
1dp2A	293	3.39e-09	c.46.1.2,c.46.1.2	32705,32706
1tq1A	129	4.32e-09	c.46.1.3	107198
1qxnA	137	1.05e-08	c.46.1.3	96537
1gmxA	108	1.15e-08	c.46.1.3	65355
2eg4A	230	1.35e-08		
1e0cA	271	1.42e-08	c.46.1.2,c.46.1.2	32717,32718
2ifdA	175	2.67e-08		
1cwtA	178	3.14e-08	c.46.1.1	32702
1ymkA	175	3.15e-08	c.46.1.1	123699
1qb0A	211	3.51e-08	c.46.1.1	32699
2ifvA	175	8.30e-08		
1c25A	161	9.00e-08	c.46.1.1	32698
2a2kA	175	1.38e-07		
1yt8A	539	3.04e-07	c.46.1.2,c.46.1.2,c.46.1.2,c.46.1.2	123996,123997,123998,123999
2k0zA	110	4.79e-06		
2fsxA	148	1.60e-05		
1okgA	373	3.86e-05	c.46.1.2,c.46.1.2,d.26.1.3	93250,93251,93252
1hzmA	154	0.000313	c.46.1.1	65975
2j6pA	152	0.000369		
1wv9A	94	0.000375		
1t3kA	152	0.001028	c.46.1.1	106357
2oucA	142	0.008850		
1veeA	134	0.2379		
2gwfA	157	0.8512	c.46.1.4	135802
1whbA	157	1.088	c.46.1.4	114639
1x31B	404	14.85		
1i2oA	316	21.96	c.1.10.1	61574
2yxeA	215	27.19		
3brqA	296	31.61		
2j13A	247	37.83	c.6.2.3	137934
2gagB	405	40.29		
2fdrA	229	40.66	c.108.1.6	133319
1vi6A	208	41.82	c.23.15.1	100736
1npyA	271	46.69	c.2.1.7,c.58.1.5	85995,85996
1wqaA	455	55.60		
1ocpA	67	56.66	a.4.1.1	15999
1o89A	345	64.76	b.35.1.2,c.2.1.1	92644,92645
2dxnA	274	65.98		
1ckhA	130	68.75	d.2.1.2	36564
2qm1A	326	68.83		
1lhjA	130	74.08	d.2.1.2	36461
1ny1A	240	74.66	c.6.2.3	86395
1w1b1	257	75.91		
1w17A	263	77.16	c.6.2.3	120573
2f46A	156	77.58		
1ywfA	296	79.04	c.45.1.5	124144
2cyeA	133	84.36	d.38.1.1	131021
2pxxA	215	84.83		
1jjiA	311	84.90	c.69.1.2	66766
2csoA	127	87.22	a.4.5.31	130778
1gf4A	130	89.01	d.2.1.2	60476