# List of top-scoring protein chains for t06-w0.5-1-str4-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1rhs 296 9.90e-12 2hhgA 139 1.40e-11 1e0cA 271 3.44e-11 c.46.1.2,c.46.1.2 32717,32718 1yt8A 539 5.24e-11 c.46.1.2,c.46.1.2,c.46.1.2,c.46.1.2 123996,123997,123998,123999 1rhsA 296 6.62e-11 c.46.1.2,c.46.1.2 32703,32704 1qb0A 211 1.28e-10 c.46.1.1 32699 1gmxA 108 1.31e-10 c.46.1.3 65355 1whbA 157 1.89e-10 c.46.1.4 114639 1t3kA 152 5.70e-10 c.46.1.1 106357 2fsxA 148 6.02e-10 2a2kA 175 1.10e-09 2j6pA 152 1.54e-09 1ymkA 175 2.66e-09 c.46.1.1 123699 2gwfA 157 3.42e-09 c.46.1.4 135802 1uarA 285 5.22e-09 c.46.1.2,c.46.1.2 107762,107763 2eg4A 230 9.61e-09 1okgA 373 2.52e-08 c.46.1.2,c.46.1.2,d.26.1.3 93250,93251,93252 2oucA 142 4.49e-08 1wv9A 94 1.52e-07 2f46A 156 0.7778 2i6jA 161 3.217 1c4oA 664 4.126 c.37.1.19,c.37.1.19 32415,32416 2hcrA 326 5.086 2b4uA 335 5.655 1oywA 523 8.147 a.4.5.43,c.37.1.19,c.37.1.19 93760,93761,93762 1yn9A 169 8.825 1oheA 348 10.27 c.45.1.1,c.45.1.1 87013,87014 1dkuA 317 10.66 c.61.1.2,c.61.1.2 34118,34119 2eplX 627 11.79 1i9sA 210 14.53 c.45.1.1 62099 1d5rA 324 14.86 b.7.1.1,c.45.1.1 23181,32697 2v1xA 591 15.72 1rxdA 159 16.47 c.45.1.1 111959 1yz4A 160 16.52 1yksA 440 16.86 c.37.1.14,c.37.1.14 123561,123562 1bf6A 291 18.23 c.1.9.3 29065 2hxpA 155 21.02 2b4pA 334 21.32 2j16A 182 22.32 1fpzA 212 23.30 c.45.1.1 59976 1u24A 337 23.95 c.45.1.4 112968 2hcmA 164 24.73 1wrmA 165 24.82 1ywfA 296 25.75 c.45.1.5 124144 2imgA 151 26.99 1ekjA 221 30.10 c.53.2.1 33364 2esbA 188 31.11 2gcgA 330 31.42 2r0bA 154 32.91 1d2mA 665 35.22 c.37.1.19,c.37.1.19 32417,32418 2c46A 241 35.83 2q1sA 377 37.09 1zzwA 149 37.09 1u9yA 284 40.10 c.61.1.2,c.61.1.2 119655,119656 1vhrA 184 40.92 c.45.1.1 32651 2nt2A 145 40.97 3cwvA 369 41.38 2o8nA 265 41.66 2az4A 429 41.66 d.157.1.10 127597 1k92A 455 42.34 c.26.2.1,d.210.1.1 68325,68326 2j4jA 226 42.53 1zsqA 528 43.94 b.55.1.8,c.45.1.3 125616,125617 2c1iA 431 44.21 c.6.2.3,d.341.1.1 129636,129637 2p4dA 172 48.43 1a53 247 49.23 2vq3A 215 49.99 2fshA 853 51.53 2hmaA 376 52.67 1vmeA 410 53.62 c.23.5.1,d.157.1.3 108893,108894 1ydgA 211 53.93 c.23.5.8 116614 1xdzA 240 54.07 c.66.1.20 115196 1vl2A 421 54.62 c.26.2.1,d.210.1.1 108708,108709 2bmfA 451 55.24 c.37.1.14,c.37.1.14 128791,128792 1uqwA 509 56.46 c.94.1.1 99799 2f4dA 184 56.82 2px6A 316 57.42 2p6xA 309 58.37 2au3A 407 58.51 1musA 477 59.08 c.55.3.4 79494 1r26A 125 60.92 c.47.1.1 96847 2q71A 356 61.28 5nul 138 62.33 2o4cA 380 63.53 2gxaA 274 63.53 3bblA 287 63.94 2iw0A 254 64.94 c.6.2.3 137737 2fcaA 213 65.58 c.66.1.53 133262 2bdeA 470 67.01 c.108.1.23 128335 2i6xA 211 67.83 2z0jA 237 68.86 1yxyA 234 70.15 c.1.2.5 124203 1pjrA 724 70.44 c.37.1.19,c.37.1.19 32391,32392 1vhyA 257 71.29 b.122.1.2,c.116.1.5 100714,100715 2csuA 457 71.32 c.2.1.8,c.23.4.1,c.23.4.1 130781,130782,130783 1vhoA 346 72.35 b.49.3.1,c.56.5.4 100694,100695 2e0tA 151 72.93 2cc0A 195 73.31 c.6.2.3 130209 1xcbA 211 75.29 a.4.5.38,c.2.1.12 109552,109553 1vi2A 300 75.54 c.2.1.7,c.58.1.5 100726,100727 1wlyA 333 77.47 2c5sA 413 79.04 c.26.2.6,d.308.1.1 129950,129951 2hk9A 275 80.42 1p0kA 349 83.55 c.1.4.1 87648 1pa1A 310 84.49 c.45.1.2 94404 2fafA 608 84.83 1umdB 324 88.03 c.36.1.7,c.48.1.2 99600,99601 1o9gA 250 89.28 c.66.1.29 86692