# List of top-scoring protein chains for t06-w0.5-1-str2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1rhs 296 4.73e-11 2hhgA 139 6.38e-11 1e0cA 271 1.10e-10 c.46.1.2,c.46.1.2 32717,32718 1yt8A 539 2.41e-10 c.46.1.2,c.46.1.2,c.46.1.2,c.46.1.2 123996,123997,123998,123999 1rhsA 296 2.75e-10 c.46.1.2,c.46.1.2 32703,32704 1qb0A 211 3.20e-10 c.46.1.1 32699 1whbA 157 5.55e-10 c.46.1.4 114639 1gmxA 108 5.70e-10 c.46.1.3 65355 1t3kA 152 2.32e-09 c.46.1.1 106357 2fsxA 148 2.67e-09 2a2kA 175 2.98e-09 2j6pA 152 5.30e-09 1uarA 285 5.76e-09 c.46.1.2,c.46.1.2 107762,107763 1ymkA 175 6.34e-09 c.46.1.1 123699 2gwfA 157 1.06e-08 c.46.1.4 135802 2eg4A 230 3.27e-08 1okgA 373 5.89e-08 c.46.1.2,c.46.1.2,d.26.1.3 93250,93251,93252 2oucA 142 1.48e-07 1wv9A 94 5.78e-07 2f46A 156 1.034 1c4oA 664 4.216 c.37.1.19,c.37.1.19 32415,32416 2b4uA 335 4.908 2i6jA 161 6.015 2hcrA 326 6.278 1i9sA 210 8.980 c.45.1.1 62099 1yn9A 169 9.306 1oheA 348 10.47 c.45.1.1,c.45.1.1 87013,87014 1dkuA 317 10.72 c.61.1.2,c.61.1.2 34118,34119 1rxdA 159 12.86 c.45.1.1 111959 1d5rA 324 13.20 b.7.1.1,c.45.1.1 23181,32697 2imgA 151 14.85 2b4pA 334 15.38 2az4A 429 15.68 d.157.1.10 127597 1fpzA 212 16.53 c.45.1.1 59976 1yz4A 160 17.33 1ekjA 221 18.16 c.53.2.1 33364 2hxpA 155 18.49 2j16A 182 19.32 2c46A 241 19.34 2v1xA 591 19.48 1wrmA 165 20.31 1ywfA 296 20.35 c.45.1.5 124144 1u24A 337 22.08 c.45.1.4 112968 1zzwA 149 22.91 2esbA 188 26.55 2hcmA 164 27.75 2eplX 627 28.15 2nt2A 145 28.54 2q1sA 377 30.45 2r0bA 154 31.40 2p4dA 172 31.73 2gcgA 330 33.50 2vq3A 215 34.14 1bf6A 291 34.63 c.1.9.3 29065 1r26A 125 35.08 c.47.1.1 96847 1u9yA 284 35.53 c.61.1.2,c.61.1.2 119655,119656 1zsqA 528 37.08 b.55.1.8,c.45.1.3 125616,125617 1oywA 523 37.13 a.4.5.43,c.37.1.19,c.37.1.19 93760,93761,93762 1vhrA 184 38.23 c.45.1.1 32651 1k92A 455 39.19 c.26.2.1,d.210.1.1 68325,68326 2hmaA 376 45.01 1z6bA 154 48.54 d.38.1.6 124510 2fshA 853 49.76 1pjrA 724 50.57 c.37.1.19,c.37.1.19 32391,32392 2j4jA 226 51.24 2f4dA 184 53.10 2cc0A 195 53.48 c.6.2.3 130209 2jhfA 374 55.94 b.35.1.2,c.2.1.1 138314,138315 1yksA 440 56.25 c.37.1.14,c.37.1.14 123561,123562 1f8fA 371 56.42 b.35.1.2,c.2.1.1 83246,83247 1huxA 270 57.64 c.55.1.5 61278 1yxyA 234 58.76 c.1.2.5 124203 2p6xA 309 59.09 2px6A 316 59.58 2c71A 216 61.14 c.6.2.3 130017 2csuA 457 61.96 c.2.1.8,c.23.4.1,c.23.4.1 130781,130782,130783 2c1iA 431 62.14 c.6.2.3,d.341.1.1 129636,129637 2gxaA 274 63.34 1mb3A 124 63.99 c.23.1.1 78907 1yb5A 351 64.91 b.35.1.2,c.2.1.1 116601,116602 1ddzA 496 65.42 c.53.2.1,c.53.2.1 33372,33373 2z0jA 237 66.58 2au3A 407 67.12 2o8nA 265 68.07 1xcbA 211 68.45 a.4.5.38,c.2.1.12 109552,109553 2qr3A 140 71.20 3cwvA 369 73.15 1vmeA 410 73.20 c.23.5.1,d.157.1.3 108893,108894 1a53 247 73.29 1pa1A 310 73.82 c.45.1.2 94404 1uqwA 509 74.68 c.94.1.1 99799 5nul 138 76.50 1o9gA 250 79.48 c.66.1.29 86692 2fafA 608 81.58 1n8kA 374 82.74 b.35.1.2,c.2.1.1 80298,80299 2iw0A 254 83.97 c.6.2.3 137737 2fcaA 213 87.10 c.66.1.53 133262 1vhqA 232 89.14 c.23.16.2 100696