# List of top-scoring protein chains for t06-w0.5-1-pb-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1rhs 296 5.08e-15 2hhgA 139 1.54e-14 1yt8A 539 1.65e-14 c.46.1.2,c.46.1.2,c.46.1.2,c.46.1.2 123996,123997,123998,123999 1e0cA 271 3.04e-14 c.46.1.2,c.46.1.2 32717,32718 1rhsA 296 3.28e-14 c.46.1.2,c.46.1.2 32703,32704 1gmxA 108 2.80e-13 c.46.1.3 65355 1qb0A 211 5.09e-13 c.46.1.1 32699 1uarA 285 1.22e-12 c.46.1.2,c.46.1.2 107762,107763 1whbA 157 1.80e-12 c.46.1.4 114639 2fsxA 148 2.07e-12 1t3kA 152 3.88e-12 c.46.1.1 106357 2j6pA 152 5.40e-12 2a2kA 175 8.90e-12 2eg4A 230 1.97e-11 1okgA 373 3.23e-11 c.46.1.2,c.46.1.2,d.26.1.3 93250,93251,93252 1ymkA 175 3.54e-11 c.46.1.1 123699 2gwfA 157 4.74e-11 c.46.1.4 135802 2oucA 142 3.85e-10 1wv9A 94 2.57e-09 2f46A 156 0.4706 1a53 247 1.194 1c4oA 664 3.790 c.37.1.19,c.37.1.19 32415,32416 2i6jA 161 4.325 1yn9A 169 4.490 1oheA 348 4.591 c.45.1.1,c.45.1.1 87013,87014 1bf6A 291 6.028 c.1.9.3 29065 2j4jA 226 6.046 1a53A 247 6.120 c.1.2.4 28564 1i9sA 210 6.425 c.45.1.1 62099 1oywA 523 7.549 a.4.5.43,c.37.1.19,c.37.1.19 93760,93761,93762 1yxyA 234 9.931 c.1.2.5 124203 2b4uA 335 10.17 2hcrA 326 10.65 1vi2A 300 12.95 c.2.1.7,c.58.1.5 100726,100727 2b4pA 334 13.17 1uqwA 509 15.53 c.94.1.1 99799 2csuA 457 16.14 c.2.1.8,c.23.4.1,c.23.4.1 130781,130782,130783 1yksA 440 16.48 c.37.1.14,c.37.1.14 123561,123562 2c46A 241 17.83 3b5vA 248 18.21 1ekjA 221 19.03 c.53.2.1 33364 2oemA 413 19.18 1yz4A 160 19.18 1d2mA 665 20.64 c.37.1.19,c.37.1.19 32417,32418 1d5rA 324 22.39 b.7.1.1,c.45.1.1 23181,32697 1zzwA 149 22.87 1npyA 271 24.53 c.2.1.7,c.58.1.5 85995,85996 2hxpA 155 25.21 1fpzA 212 25.86 c.45.1.1 59976 3cwvA 369 25.89 1vhrA 184 25.96 c.45.1.1 32651 1dkuA 317 26.61 c.61.1.2,c.61.1.2 34118,34119 2esbA 188 28.42 2d69A 430 28.78 c.1.14.1,d.58.9.1 131292,131293 1zsqA 528 28.92 b.55.1.8,c.45.1.3 125616,125617 2eplX 627 31.07 2i6xA 211 31.32 1vl2A 421 32.15 c.26.2.1,d.210.1.1 108708,108709 2p4gA 270 32.79 2o8nA 265 33.25 2eihA 343 33.74 1ywfA 296 34.14 c.45.1.5 124144 2imgA 151 35.24 2hcmA 164 35.34 2v8oA 444 35.82 1jztA 246 36.56 c.104.1.1 63319 2v1xA 591 36.95 1rxdA 159 37.06 c.45.1.1 111959 1te2A 226 37.07 c.108.1.6 106792 1gpjA 404 37.24 a.151.1.1,c.2.1.7,d.58.39.1 65451,65452,65453 1k92A 455 37.79 c.26.2.1,d.210.1.1 68325,68326 2c71A 216 37.92 c.6.2.3 130017 2c1iA 431 38.45 c.6.2.3,d.341.1.1 129636,129637 3cggA 195 38.48 1n8kA 374 39.97 b.35.1.2,c.2.1.1 80298,80299 1fukA 165 40.08 c.37.1.19 32409 1u24A 337 40.09 c.45.1.4 112968 1f8fA 371 42.35 b.35.1.2,c.2.1.1 83246,83247 2nt2A 145 42.95 1mb3A 124 43.03 c.23.1.1 78907 2gllA 171 43.03 1z6bA 154 43.80 d.38.1.6 124510 2j16A 182 44.00 1huxA 270 44.10 c.55.1.5 61278 2jhfA 374 44.40 b.35.1.2,c.2.1.1 138314,138315 1wlyA 333 44.47 2cc0A 195 44.62 c.6.2.3 130209 1j93A 353 44.93 c.1.22.1 66454 1wrmA 165 45.76 1v7zA 260 46.30 c.125.1.1 100488 2o4cA 380 46.48 1yb5A 351 47.28 b.35.1.2,c.2.1.1 116601,116602 2ay1A 394 47.52 c.67.1.1 34357 1xcbA 211 47.81 a.4.5.38,c.2.1.12 109552,109553 1byi 224 49.86 2c5sA 413 49.97 c.26.2.6,d.308.1.1 129950,129951 2vq3A 215 50.42 2e0tA 151 52.39 2e7uA 424 52.61 1p0fA 373 53.01 b.35.1.2,c.2.1.1 87642,87643 2z6rA 265 53.24 1qorA 327 53.46 b.35.1.2,c.2.1.1 24766,29782 1r26A 125 53.55 c.47.1.1 96847 1ep3A 311 53.94 c.1.4.1 28597 2fshA 853 54.00 1p5jA 372 54.39 c.79.1.1 104067 2r0bA 154 57.80 1pswA 348 58.41 c.87.1.7 88287 2f4dA 184 59.01 2iw0A 254 59.86 c.6.2.3 137737 1ykwA 435 60.11 c.1.14.1,d.58.9.1 123565,123566 1u3wA 374 60.66 b.35.1.2,c.2.1.1 113013,113014 2b0cA 206 60.99 c.108.1.2 127633 2no4A 240 61.11 2i4iA 417 62.00 1ars 396 62.76 1geqA 248 62.94 c.1.2.4 28589 1lzlA 323 63.04 c.69.1.2 78306 1zrnA 232 63.12 c.108.1.1 43323 1ddzA 496 63.69 c.53.2.1,c.53.2.1 33372,33373 2vlbA 251 65.05 2fcaA 213 66.01 c.66.1.53 133262 2gxaA 274 66.83 1dpeA 507 67.61 c.94.1.1 35799 2hmaA 376 68.71 2az4A 429 69.85 d.157.1.10 127597 2fh7A 595 70.39 2q1sA 377 70.45 2r98A 456 70.99 2nyvA 222 71.75 2dt5A 211 72.09 a.4.5.38,c.2.1.12 131708,131709 1ps9A 671 73.26 c.1.4.1,c.3.1.1,c.4.1.1 95076,95077,95078 2hk9A 275 73.51 1thfD 253 74.76 c.1.2.1 28535 1h5yA 253 75.35 c.1.2.1 65638 1musA 477 75.90 c.55.3.4 79494 1r61A 207 76.13 c.8.8.1 97138 1wy2A 351 77.91 2qdxA 257 78.70 1rd5A 262 79.41 c.1.2.4 111772 1pjrA 724 79.41 c.37.1.19,c.37.1.19 32391,32392 1u4nA 310 79.61 c.69.1.2 113021 2q71A 356 81.28 1kl7A 514 81.41 c.79.1.1 72678 2b5eA 504 82.02 c.47.1.2,c.47.1.2,c.47.1.2,c.47.1.2 127888,127889,127890,127891 2aznA 219 83.12 c.71.1.2 127608 2b3zA 373 85.53 c.71.1.2,c.97.1.2 127807,127808 2hoqA 241 88.15 1vimA 200 89.02 c.80.1.3 100758