# List of top-scoring protein chains for t06-w0.5-1-o_sep-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1rhs	296	2.66e-12		
2hhgA	139	3.09e-12		
1e0cA	271	1.76e-11	c.46.1.2,c.46.1.2	32717,32718
1rhsA	296	1.86e-11	c.46.1.2,c.46.1.2	32703,32704
1yt8A	539	2.76e-11	c.46.1.2,c.46.1.2,c.46.1.2,c.46.1.2	123996,123997,123998,123999
1gmxA	108	2.78e-11	c.46.1.3	65355
1qb0A	211	5.42e-11	c.46.1.1	32699
1whbA	157	1.40e-10	c.46.1.4	114639
2fsxA	148	2.01e-10		
1t3kA	152	3.25e-10	c.46.1.1	106357
2a2kA	175	5.31e-10		
2j6pA	152	1.13e-09		
1uarA	285	1.28e-09	c.46.1.2,c.46.1.2	107762,107763
2gwfA	157	1.75e-09	c.46.1.4	135802
1ymkA	175	1.90e-09	c.46.1.1	123699
2eg4A	230	2.72e-09		
1okgA	373	2.56e-08	c.46.1.2,c.46.1.2,d.26.1.3	93250,93251,93252
2oucA	142	3.66e-08		
1wv9A	94	2.06e-07		
2f46A	156	2.783		
1c4oA	664	4.729	c.37.1.19,c.37.1.19	32415,32416
2hcrA	326	6.040		
2i6jA	161	6.063		
1bf6A	291	14.42	c.1.9.3	29065
1yn9A	169	15.91		
1dkuA	317	16.27	c.61.1.2,c.61.1.2	34118,34119
1rxdA	159	16.45	c.45.1.1	111959
1i9sA	210	18.41	c.45.1.1	62099
2v1xA	591	20.47		
2b4uA	335	21.85		
1oywA	523	24.44	a.4.5.43,c.37.1.19,c.37.1.19	93760,93761,93762
1vi2A	300	27.66	c.2.1.7,c.58.1.5	100726,100727
1a53	247	29.02		
2eplX	627	30.26		
1d5rA	324	31.86	b.7.1.1,c.45.1.1	23181,32697
1yz4A	160	32.27		
1mb3A	124	32.46	c.23.1.1	78907
1fpzA	212	34.02	c.45.1.1	59976
1oheA	348	37.85	c.45.1.1,c.45.1.1	87013,87014
2imgA	151	38.27		
2c46A	241	39.57		
3brqA	296	39.85		
1yksA	440	42.68	c.37.1.14,c.37.1.14	123561,123562
1ywfA	296	43.95	c.45.1.5	124144
2j4jA	226	44.09		
2j16A	182	44.97		
1d2mA	665	45.70	c.37.1.19,c.37.1.19	32417,32418
1npyA	271	45.82	c.2.1.7,c.58.1.5	85995,85996
1musA	477	47.52	c.55.3.4	79494
2az4A	429	48.32	d.157.1.10	127597
2fshA	853	49.59		
1p5jA	372	50.15	c.79.1.1	104067
1xdzA	240	50.32	c.66.1.20	115196
1wrmA	165	50.37		
1ekjA	221	50.86	c.53.2.1	33364
1kgsA	225	53.10	a.4.6.1,c.23.1.1	68596,68597
1zzwA	149	54.88		
2hxpA	155	55.17		
2px6A	316	57.77		
5nul	138	58.98		
2b4pA	334	61.13		
2nloA	302	62.49		
2iw0A	254	64.30	c.6.2.3	137737
1ys7A	233	64.34	a.4.6.1,c.23.1.1	123961,123962
2p4dA	172	64.65		
2hk9A	275	66.43		
2q1sA	377	66.57		
1r26A	125	67.03	c.47.1.1	96847
2r0bA	154	67.88		
2esbA	188	71.54		
1uqwA	509	72.25	c.94.1.1	99799
2z0jA	237	73.76		
1dbwA	126	75.07	c.23.1.1	31095
2cc0A	195	77.01	c.6.2.3	130209
1u8tA	129	77.22	c.23.1.1	113192
2jbaA	127	77.29		
3cwvA	369	77.41		
2pbfA	227	81.48		
2hcmA	164	81.60		
1p0kA	349	81.65	c.1.4.1	87648
1b00A	127	82.29	c.23.1.1	31122
1z6bA	154	83.92	d.38.1.6	124510
2fdxA	138	84.85	c.23.5.1	31192
2p6xA	309	85.49		
1u24A	337	86.58	c.45.1.4	112968
2qr3A	140	88.93