# List of top-scoring protein chains for t06-w0.5-1-o_notor2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1rhs 296 2.90e-12 2hhgA 139 2.91e-12 1e0cA 271 1.91e-11 c.46.1.2,c.46.1.2 32717,32718 1rhsA 296 2.44e-11 c.46.1.2,c.46.1.2 32703,32704 1yt8A 539 2.90e-11 c.46.1.2,c.46.1.2,c.46.1.2,c.46.1.2 123996,123997,123998,123999 1gmxA 108 2.94e-11 c.46.1.3 65355 1qb0A 211 5.55e-11 c.46.1.1 32699 1whbA 157 1.54e-10 c.46.1.4 114639 2fsxA 148 2.09e-10 1t3kA 152 3.25e-10 c.46.1.1 106357 2a2kA 175 5.41e-10 2j6pA 152 8.99e-10 2gwfA 157 1.79e-09 c.46.1.4 135802 1ymkA 175 1.93e-09 c.46.1.1 123699 1uarA 285 2.53e-09 c.46.1.2,c.46.1.2 107762,107763 2eg4A 230 4.08e-09 1okgA 373 2.74e-08 c.46.1.2,c.46.1.2,d.26.1.3 93250,93251,93252 2oucA 142 4.09e-08 1wv9A 94 2.35e-07 2f46A 156 2.144 1c4oA 664 4.107 c.37.1.19,c.37.1.19 32415,32416 2i6jA 161 5.623 2hcrA 326 6.561 1rxdA 159 12.31 c.45.1.1 111959 1bf6A 291 14.04 c.1.9.3 29065 2b4uA 335 14.36 1yn9A 169 16.75 1dkuA 317 17.46 c.61.1.2,c.61.1.2 34118,34119 1i9sA 210 20.45 c.45.1.1 62099 2v1xA 591 21.45 1oywA 523 24.62 a.4.5.43,c.37.1.19,c.37.1.19 93760,93761,93762 1yz4A 160 25.10 1d5rA 324 26.01 b.7.1.1,c.45.1.1 23181,32697 1mb3A 124 28.23 c.23.1.1 78907 2eplX 627 28.32 1fpzA 212 31.89 c.45.1.1 59976 1oheA 348 31.93 c.45.1.1,c.45.1.1 87013,87014 1vi2A 300 32.46 c.2.1.7,c.58.1.5 100726,100727 2imgA 151 33.94 1a53 247 34.46 2j16A 182 36.24 1ekjA 221 37.77 c.53.2.1 33364 2j4jA 226 38.78 2fshA 853 39.92 1yksA 440 40.41 c.37.1.14,c.37.1.14 123561,123562 1ywfA 296 40.47 c.45.1.5 124144 2az4A 429 42.06 d.157.1.10 127597 1npyA 271 42.39 c.2.1.7,c.58.1.5 85995,85996 1wrmA 165 42.68 2hxpA 155 42.84 1kgsA 225 43.12 a.4.6.1,c.23.1.1 68596,68597 1musA 477 44.31 c.55.3.4 79494 2c46A 241 46.71 1ys7A 233 47.75 a.4.6.1,c.23.1.1 123961,123962 1zzwA 149 48.39 5nul 138 51.92 1xdzA 240 53.26 c.66.1.20 115196 2p6xA 309 54.64 2q1sA 377 55.32 3brqA 296 55.92 2r0bA 154 56.84 1u8tA 129 57.46 c.23.1.1 113192 1dbwA 126 58.76 c.23.1.1 31095 1u24A 337 58.79 c.45.1.4 112968 2p4dA 172 58.86 2c5sA 413 59.31 c.26.2.6,d.308.1.1 129950,129951 1uqwA 509 60.54 c.94.1.1 99799 2jbaA 127 60.63 2esbA 188 60.82 1d2mA 665 60.94 c.37.1.19,c.37.1.19 32417,32418 2px6A 316 62.39 1p5jA 372 64.15 c.79.1.1 104067 2nloA 302 66.88 2hk9A 275 67.11 2b4pA 334 67.25 1huxA 270 67.74 c.55.1.5 61278 1mvoA 136 67.87 c.23.1.1 79513 2iw0A 254 67.91 c.6.2.3 137737 1b00A 127 68.99 c.23.1.1 31122 2fdxA 138 69.50 c.23.5.1 31192 2qr3A 140 70.70 2hcmA 164 71.33 1r26A 125 71.81 c.47.1.1 96847 2z0jA 237 72.67 1p0kA 349 80.13 c.1.4.1 87648 2au3A 407 82.15 2pbfA 227 83.04 5nulA 138 83.11 c.23.5.1 31191 2cc0A 195 85.40 c.6.2.3 130209 2fvyA 309 89.53 c.93.1.1 134227