# List of top-scoring protein chains for t06-w0.5-1-o_notor-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1rhs 296 5.06e-12 2hhgA 139 6.13e-12 1e0cA 271 2.61e-11 c.46.1.2,c.46.1.2 32717,32718 1rhsA 296 3.92e-11 c.46.1.2,c.46.1.2 32703,32704 1gmxA 108 5.19e-11 c.46.1.3 65355 1qb0A 211 6.65e-11 c.46.1.1 32699 1yt8A 539 7.07e-11 c.46.1.2,c.46.1.2,c.46.1.2,c.46.1.2 123996,123997,123998,123999 1whbA 157 1.80e-10 c.46.1.4 114639 2fsxA 148 3.05e-10 1t3kA 152 4.41e-10 c.46.1.1 106357 2a2kA 175 6.52e-10 2j6pA 152 1.14e-09 2gwfA 157 2.29e-09 c.46.1.4 135802 1ymkA 175 2.42e-09 c.46.1.1 123699 1uarA 285 2.99e-09 c.46.1.2,c.46.1.2 107762,107763 2eg4A 230 6.05e-09 1okgA 373 4.22e-08 c.46.1.2,c.46.1.2,d.26.1.3 93250,93251,93252 2oucA 142 4.52e-08 1wv9A 94 3.07e-07 2f46A 156 2.261 1c4oA 664 5.008 c.37.1.19,c.37.1.19 32415,32416 2i6jA 161 5.834 2hcrA 326 7.719 2b4uA 335 11.93 1bf6A 291 12.79 c.1.9.3 29065 1yn9A 169 12.98 1rxdA 159 14.34 c.45.1.1 111959 1i9sA 210 15.36 c.45.1.1 62099 1dkuA 317 19.22 c.61.1.2,c.61.1.2 34118,34119 1d5rA 324 19.34 b.7.1.1,c.45.1.1 23181,32697 1yz4A 160 23.19 2eplX 627 25.47 1mb3A 124 26.97 c.23.1.1 78907 2az4A 429 27.62 d.157.1.10 127597 2imgA 151 28.24 1a53 247 29.56 2v1xA 591 30.27 1oheA 348 31.23 c.45.1.1,c.45.1.1 87013,87014 1fpzA 212 31.38 c.45.1.1 59976 1ekjA 221 31.75 c.53.2.1 33364 1wrmA 165 35.51 1musA 477 35.51 c.55.3.4 79494 2c46A 241 36.25 1oywA 523 36.56 a.4.5.43,c.37.1.19,c.37.1.19 93760,93761,93762 5nul 138 36.94 2j16A 182 39.73 1ywfA 296 41.56 c.45.1.5 124144 2fshA 853 42.31 2hxpA 155 42.98 1zzwA 149 43.45 1vi2A 300 43.94 c.2.1.7,c.58.1.5 100726,100727 1kgsA 225 44.58 a.4.6.1,c.23.1.1 68596,68597 3brqA 296 44.71 2j4jA 226 46.19 2p4dA 172 48.17 2b4pA 334 48.40 2esbA 188 49.77 1u24A 337 52.54 c.45.1.4 112968 1npyA 271 53.78 c.2.1.7,c.58.1.5 85995,85996 1yksA 440 55.47 c.37.1.14,c.37.1.14 123561,123562 2hcmA 164 56.49 2fdxA 138 57.84 c.23.5.1 31192 2r0bA 154 58.18 1huxA 270 58.28 c.55.1.5 61278 1ys7A 233 58.56 a.4.6.1,c.23.1.1 123961,123962 2c5sA 413 59.48 c.26.2.6,d.308.1.1 129950,129951 2qr3A 140 61.00 2p6xA 309 61.04 2px6A 316 61.28 2jbaA 127 61.34 2z0jA 237 61.95 1xdzA 240 63.31 c.66.1.20 115196 2hk9A 275 64.10 1uqwA 509 67.07 c.94.1.1 99799 1d2mA 665 67.60 c.37.1.19,c.37.1.19 32417,32418 1p5jA 372 70.41 c.79.1.1 104067 1oi7A 288 70.85 c.2.1.8,c.23.4.1 87049,87050 2nloA 302 71.76 1u8tA 129 71.94 c.23.1.1 113192 2nt2A 145 72.24 1b00A 127 72.74 c.23.1.1 31122 2q1sA 377 73.31 5nulA 138 73.62 c.23.5.1 31191 1dbwA 126 75.85 c.23.1.1 31095 1r26A 125 76.06 c.47.1.1 96847 1vhrA 184 76.26 c.45.1.1 32651 1z6bA 154 76.44 d.38.1.6 124510 2pbfA 227 78.38 2fvyA 309 80.01 c.93.1.1 134227 1mvoA 136 80.05 c.23.1.1 79513 1vmeA 410 81.55 c.23.5.1,d.157.1.3 108893,108894 2iw0A 254 82.45 c.6.2.3 137737 3cwvA 369 83.01 2p4gA 270 86.34