# List of top-scoring protein chains for t06-w0.5-1-near-backbone-11-0.3-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2hhgA	139	2.99e-14		
1rhs	296	3.88e-14		
1yt8A	539	1.83e-13	c.46.1.2,c.46.1.2,c.46.1.2,c.46.1.2	123996,123997,123998,123999
1rhsA	296	1.92e-13	c.46.1.2,c.46.1.2	32703,32704
1e0cA	271	1.96e-13	c.46.1.2,c.46.1.2	32717,32718
1gmxA	108	2.75e-13	c.46.1.3	65355
1qb0A	211	6.02e-13	c.46.1.1	32699
1whbA	157	1.39e-12	c.46.1.4	114639
1t3kA	152	1.64e-12	c.46.1.1	106357
2j6pA	152	2.10e-12		
2a2kA	175	7.79e-12		
2fsxA	148	8.32e-12		
1uarA	285	2.15e-11	c.46.1.2,c.46.1.2	107762,107763
2gwfA	157	5.15e-11	c.46.1.4	135802
1ymkA	175	1.00e-10	c.46.1.1	123699
2eg4A	230	1.16e-10		
1okgA	373	3.26e-10	c.46.1.2,c.46.1.2,d.26.1.3	93250,93251,93252
2oucA	142	6.10e-10		
1wv9A	94	2.37e-09		
2f46A	156	1.680		
2hcrA	326	3.467		
1c4oA	664	3.522	c.37.1.19,c.37.1.19	32415,32416
1yn9A	169	5.699		
1oywA	523	6.617	a.4.5.43,c.37.1.19,c.37.1.19	93760,93761,93762
2iw0A	254	6.774	c.6.2.3	137737
2v1xA	591	7.012		
1bf6A	291	7.447	c.1.9.3	29065
1d5rA	324	7.573	b.7.1.1,c.45.1.1	23181,32697
2i6jA	161	7.588		
1oheA	348	8.462	c.45.1.1,c.45.1.1	87013,87014
1dkuA	317	14.38	c.61.1.2,c.61.1.2	34118,34119
2o8nA	265	15.10		
2c1iA	431	21.97	c.6.2.3,d.341.1.1	129636,129637
2c71A	216	22.63	c.6.2.3	130017
1fpzA	212	25.62	c.45.1.1	59976
1reqB	637	27.14	c.1.19.1,c.23.6.1	29621,31248
2esbA	188	27.19		
2p4dA	172	27.70		
2vq3A	215	28.31		
1vl2A	421	29.10	c.26.2.1,d.210.1.1	108708,108709
2yzkA	178	29.50		
1vhrA	184	30.98	c.45.1.1	32651
2b4uA	335	32.22		
1u9yA	284	33.11	c.61.1.2,c.61.1.2	119655,119656
2c46A	241	33.48		
2j16A	182	35.81		
2f4dA	184	36.15		
2px6A	316	36.53		
1musA	477	37.13	c.55.3.4	79494
2q1sA	377	39.44		
2imgA	151	39.70		
1i9sA	210	43.23	c.45.1.1	62099
1zzwA	149	44.98		
2r0bA	154	50.59		
2db3A	434	51.28		
2fafA	608	51.55		
2hcmA	164	53.98		
2eplX	627	54.43		
1fsgA	233	54.64	c.61.1.1	34029
1pswA	348	54.96	c.87.1.7	88287
1k92A	455	55.65	c.26.2.1,d.210.1.1	68325,68326
2cc0A	195	56.96	c.6.2.3	130209
1ecfA	504	57.33	c.61.1.1,d.153.1.1	34053,41820
3cwvA	369	57.37		
2qniA	219	57.97		
5nul	138	58.34		
1a4iA	301	60.32	c.2.1.7,c.58.1.2	30278,33926
2qiwA	255	63.14		
1jztA	246	63.52	c.104.1.1	63319
1yz4A	160	63.78		
1kpgA	287	64.43	c.66.1.18	68735
2hxpA	155	66.53		
1rxdA	159	68.78	c.45.1.1	111959
1r26A	125	69.46	c.47.1.1	96847
1yksA	440	69.63	c.37.1.14,c.37.1.14	123561,123562
2aeeA	211	71.81	c.61.1.1	126620
2e0tA	151	72.04		
1j0dA	341	73.54	c.79.1.1	83902
1ny1A	240	74.67	c.6.2.3	86395
1u24A	337	76.21	c.45.1.4	112968
3c4vA	426	77.80		
1m1zA	513	79.13	c.26.2.1,d.153.1.1	78457,78458
1jmkC	230	79.79	c.69.1.22	71747
2bogX	286	83.26		
1tib	269	84.93		
1zd3A	555	85.73	c.108.1.2,c.69.1.11	124930,124931
1jx6A	342	89.11	c.93.1.1	67406