# List of top-scoring protein chains for t06-w0.5-1-n_sep-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1rhs 296 1.23e-13 2hhgA 139 1.86e-13 1e0cA 271 5.06e-13 c.46.1.2,c.46.1.2 32717,32718 1yt8A 539 5.96e-13 c.46.1.2,c.46.1.2,c.46.1.2,c.46.1.2 123996,123997,123998,123999 1rhsA 296 7.03e-13 c.46.1.2,c.46.1.2 32703,32704 1qb0A 211 2.71e-12 c.46.1.1 32699 1gmxA 108 4.15e-12 c.46.1.3 65355 1whbA 157 6.36e-12 c.46.1.4 114639 1t3kA 152 1.69e-11 c.46.1.1 106357 2fsxA 148 1.70e-11 2a2kA 175 2.90e-11 1uarA 285 5.17e-11 c.46.1.2,c.46.1.2 107762,107763 2j6pA 152 5.28e-11 2eg4A 230 1.14e-10 1ymkA 175 1.50e-10 c.46.1.1 123699 2gwfA 157 1.53e-10 c.46.1.4 135802 1okgA 373 5.64e-10 c.46.1.2,c.46.1.2,d.26.1.3 93250,93251,93252 2oucA 142 2.94e-09 1wv9A 94 2.37e-08 2f46A 156 1.385 1c4oA 664 2.886 c.37.1.19,c.37.1.19 32415,32416 2i6jA 161 4.155 2hcrA 326 4.595 1yn9A 169 8.166 2j4jA 226 8.314 2v1xA 591 8.703 2b4uA 335 9.682 2eplX 627 10.79 1dkuA 317 12.40 c.61.1.2,c.61.1.2 34118,34119 1i9sA 210 12.57 c.45.1.1 62099 1d2mA 665 13.43 c.37.1.19,c.37.1.19 32417,32418 1bf6A 291 15.66 c.1.9.3 29065 1oheA 348 16.72 c.45.1.1,c.45.1.1 87013,87014 1fpzA 212 19.10 c.45.1.1 59976 2hxpA 155 20.68 1a53 247 20.88 1vi2A 300 21.18 c.2.1.7,c.58.1.5 100726,100727 1yz4A 160 21.41 1oywA 523 23.43 a.4.5.43,c.37.1.19,c.37.1.19 93760,93761,93762 2j16A 182 24.37 1yksA 440 24.67 c.37.1.14,c.37.1.14 123561,123562 1d5rA 324 25.88 b.7.1.1,c.45.1.1 23181,32697 1wrmA 165 28.19 2imgA 151 28.73 3cwvA 369 29.71 2c46A 241 29.88 1zzwA 149 30.12 1ywfA 296 30.19 c.45.1.5 124144 2b4pA 334 30.66 1ekjA 221 31.35 c.53.2.1 33364 2esbA 188 32.86 1vl2A 421 33.55 c.26.2.1,d.210.1.1 108708,108709 1r26A 125 34.61 c.47.1.1 96847 2fshA 853 34.67 1u24A 337 36.38 c.45.1.4 112968 2p4dA 172 36.78 1musA 477 45.37 c.55.3.4 79494 2iw0A 254 45.63 c.6.2.3 137737 1rxdA 159 47.70 c.45.1.1 111959 2vq3A 215 47.98 1jztA 246 48.86 c.104.1.1 63319 1f8fA 371 51.67 b.35.1.2,c.2.1.1 83246,83247 1p0kA 349 51.80 c.1.4.1 87648 1vhrA 184 52.82 c.45.1.1 32651 1yxyA 234 54.30 c.1.2.5 124203 2c5sA 413 55.43 c.26.2.6,d.308.1.1 129950,129951 1k92A 455 56.43 c.26.2.1,d.210.1.1 68325,68326 2c71A 216 56.55 c.6.2.3 130017 2csuA 457 57.07 c.2.1.8,c.23.4.1,c.23.4.1 130781,130782,130783 2px6A 316 62.22 2c1iA 431 63.26 c.6.2.3,d.341.1.1 129636,129637 2hk9A 275 66.52 1z6bA 154 66.85 d.38.1.6 124510 1u9yA 284 69.81 c.61.1.2,c.61.1.2 119655,119656 2pbfA 227 70.04 2cc0A 195 73.26 c.6.2.3 130209 2f4dA 184 74.11 2jhfA 374 76.04 b.35.1.2,c.2.1.1 138314,138315 1a53A 247 76.10 c.1.2.4 28564 2eihA 343 77.97 2o8nA 265 80.79 1qorA 327 82.02 b.35.1.2,c.2.1.1 24766,29782 2z0jA 237 82.57 2hcmA 164 82.75 1chmA 401 83.49 c.55.2.1,d.127.1.1 33545,41142 2nloA 302 83.68 1n8kA 374 84.16 b.35.1.2,c.2.1.1 80298,80299 2q1sA 377 84.60 1yb5A 351 85.04 b.35.1.2,c.2.1.1 116601,116602 2qr3A 140 85.50 2i4iA 417 86.13 2hmaA 376 86.41 1xdzA 240 86.82 c.66.1.20 115196 1ydgA 211 87.35 c.23.5.8 116614 2e0tA 151 87.99 1q74A 303 88.61 c.134.1.1 96019 2fcaA 213 89.08 c.66.1.53 133262 1m1zA 513 89.12 c.26.2.1,d.153.1.1 78457,78458 1e5eA 404 89.44 c.67.1.3 59265