# List of top-scoring protein chains for t06-w0.5-1-n_notor-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1rhs 296 1.50e-13 2hhgA 139 2.79e-13 1e0cA 271 5.59e-13 c.46.1.2,c.46.1.2 32717,32718 1yt8A 539 6.22e-13 c.46.1.2,c.46.1.2,c.46.1.2,c.46.1.2 123996,123997,123998,123999 1rhsA 296 7.84e-13 c.46.1.2,c.46.1.2 32703,32704 1qb0A 211 3.18e-12 c.46.1.1 32699 1gmxA 108 4.59e-12 c.46.1.3 65355 1whbA 157 8.76e-12 c.46.1.4 114639 1t3kA 152 1.65e-11 c.46.1.1 106357 2fsxA 148 1.85e-11 2a2kA 175 3.15e-11 1uarA 285 4.30e-11 c.46.1.2,c.46.1.2 107762,107763 2j6pA 152 5.19e-11 2eg4A 230 1.38e-10 1ymkA 175 1.50e-10 c.46.1.1 123699 2gwfA 157 1.92e-10 c.46.1.4 135802 1okgA 373 4.99e-10 c.46.1.2,c.46.1.2,d.26.1.3 93250,93251,93252 2oucA 142 3.44e-09 1wv9A 94 1.77e-08 2f46A 156 1.036 1c4oA 664 2.143 c.37.1.19,c.37.1.19 32415,32416 2i6jA 161 3.126 2hcrA 326 4.477 2v1xA 591 4.572 2b4uA 335 5.750 1yn9A 169 7.469 2eplX 627 8.830 2j4jA 226 9.866 1i9sA 210 9.895 c.45.1.1 62099 1dkuA 317 9.96 c.61.1.2,c.61.1.2 34118,34119 1d2mA 665 11.25 c.37.1.19,c.37.1.19 32417,32418 1oheA 348 11.61 c.45.1.1,c.45.1.1 87013,87014 1bf6A 291 12.55 c.1.9.3 29065 1fpzA 212 14.40 c.45.1.1 59976 2hxpA 155 17.04 1yz4A 160 17.41 1a53 247 17.71 1yksA 440 17.87 c.37.1.14,c.37.1.14 123561,123562 1vi2A 300 17.99 c.2.1.7,c.58.1.5 100726,100727 1oywA 523 18.28 a.4.5.43,c.37.1.19,c.37.1.19 93760,93761,93762 1d5rA 324 18.56 b.7.1.1,c.45.1.1 23181,32697 1vl2A 421 18.61 c.26.2.1,d.210.1.1 108708,108709 2j16A 182 18.68 2imgA 151 20.23 2b4pA 334 22.68 1zzwA 149 23.28 1wrmA 165 23.90 2c46A 241 24.07 2fshA 853 24.10 1ekjA 221 26.38 c.53.2.1 33364 1ywfA 296 26.70 c.45.1.5 124144 1u24A 337 28.78 c.45.1.4 112968 2c5sA 413 29.06 c.26.2.6,d.308.1.1 129950,129951 2esbA 188 29.62 1rxdA 159 30.56 c.45.1.1 111959 1k92A 455 31.50 c.26.2.1,d.210.1.1 68325,68326 2p4dA 172 34.23 1vhrA 184 35.22 c.45.1.1 32651 2vq3A 215 37.47 1jztA 246 38.06 c.104.1.1 63319 3cwvA 369 39.62 2csuA 457 42.02 c.2.1.8,c.23.4.1,c.23.4.1 130781,130782,130783 1p0kA 349 43.54 c.1.4.1 87648 2pbfA 227 44.17 2f4dA 184 44.70 1yxyA 234 45.33 c.1.2.5 124203 1r26A 125 46.85 c.47.1.1 96847 2px6A 316 47.51 2i4iA 417 48.24 2iw0A 254 48.62 c.6.2.3 137737 1e5eA 404 49.81 c.67.1.3 59265 1musA 477 57.62 c.55.3.4 79494 2hmaA 376 62.58 2qr3A 140 63.55 1m1zA 513 65.15 c.26.2.1,d.153.1.1 78457,78458 2c1iA 431 65.48 c.6.2.3,d.341.1.1 129636,129637 1vh0A 161 65.73 c.116.1.3 100626 2hcmA 164 66.19 2c71A 216 67.52 c.6.2.3 130017 1chmA 401 68.48 c.55.2.1,d.127.1.1 33545,41142 1zupA 315 68.72 c.55.3.11 125681 1a53A 247 68.88 c.1.2.4 28564 2hk9A 275 69.07 1i1nA 226 69.80 c.66.1.7 71102 2q1sA 377 70.49 2cc0A 195 70.65 c.6.2.3 130209 1u9yA 284 72.07 c.61.1.2,c.61.1.2 119655,119656 2o8nA 265 73.54 2z0jA 237 74.07 1zsyA 357 78.29 2fafA 608 78.43 2cmd 312 80.26 1z6bA 154 80.60 d.38.1.6 124510 2v8oA 444 80.68 2nyvA 222 80.73 2e7uA 424 80.77 1mb3A 124 81.29 c.23.1.1 78907 2nloA 302 81.80 1zsqA 528 83.41 b.55.1.8,c.45.1.3 125616,125617 2e0tA 151 84.68 2yzkA 178 86.57 1ys7A 233 88.63 a.4.6.1,c.23.1.1 123961,123962 2gxaA 274 88.91 2fcaA 213 89.70 c.66.1.53 133262