# List of top-scoring protein chains for t06-w0.5-1-dssp-ehl2-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1rhs	296	2.70e-14		
2hhgA	139	2.88e-14		
1e0cA	271	1.44e-13	c.46.1.2,c.46.1.2	32717,32718
1qb0A	211	1.56e-13	c.46.1.1	32699
1whbA	157	1.83e-13	c.46.1.4	114639
1yt8A	539	1.95e-13	c.46.1.2,c.46.1.2,c.46.1.2,c.46.1.2	123996,123997,123998,123999
1rhsA	296	2.58e-13	c.46.1.2,c.46.1.2	32703,32704
1gmxA	108	4.44e-13	c.46.1.3	65355
1t3kA	152	1.07e-12	c.46.1.1	106357
2a2kA	175	3.25e-12		
2fsxA	148	3.25e-12		
2j6pA	152	6.74e-12		
2gwfA	157	9.01e-12	c.46.1.4	135802
1ymkA	175	1.56e-11	c.46.1.1	123699
1uarA	285	3.22e-11	c.46.1.2,c.46.1.2	107762,107763
2eg4A	230	1.27e-10		
2oucA	142	2.29e-10		
1okgA	373	2.80e-10	c.46.1.2,c.46.1.2,d.26.1.3	93250,93251,93252
1wv9A	94	4.27e-09		
2f46A	156	0.8945		
1c4oA	664	2.478	c.37.1.19,c.37.1.19	32415,32416
2i6jA	161	3.905		
1yn9A	169	5.869		
1i9sA	210	7.503	c.45.1.1	62099
2b4uA	335	8.726		
2hcrA	326	11.19		
2eplX	627	17.38		
1d5rA	324	17.47	b.7.1.1,c.45.1.1	23181,32697
1yz4A	160	18.78		
1fpzA	212	19.31	c.45.1.1	59976
1dkuA	317	22.23	c.61.1.2,c.61.1.2	34118,34119
1z6bA	154	22.93	d.38.1.6	124510
2j16A	182	22.95		
1ywfA	296	23.47	c.45.1.5	124144
2hxpA	155	23.59		
1ekjA	221	23.66	c.53.2.1	33364
2c46A	241	24.10		
1wrmA	165	24.65		
1bf6A	291	25.68	c.1.9.3	29065
1oheA	348	26.51	c.45.1.1,c.45.1.1	87013,87014
1u24A	337	26.75	c.45.1.4	112968
2esbA	188	28.05		
1zzwA	149	29.94		
2j4jA	226	32.36		
2hcmA	164	33.21		
2imgA	151	34.08		
3cwvA	369	35.06		
2p4dA	172	40.32		
1vhrA	184	45.84	c.45.1.1	32651
1oywA	523	45.89	a.4.5.43,c.37.1.19,c.37.1.19	93760,93761,93762
2r0bA	154	46.12		
1r26A	125	47.42	c.47.1.1	96847
1kpgA	287	47.82	c.66.1.18	68735
2v1xA	591	49.61		
2nt2A	145	49.87		
2b4pA	334	52.71		
2gcgA	330	52.92		
1huxA	270	53.47	c.55.1.5	61278
1yksA	440	58.04	c.37.1.14,c.37.1.14	123561,123562
1xexB	172	58.72		
2vq3A	215	62.75		
2gllA	171	66.64		
2px6A	316	70.31		
2c71A	216	70.93	c.6.2.3	130017
1uqwA	509	71.35	c.94.1.1	99799
2c1iA	431	71.50	c.6.2.3,d.341.1.1	129636,129637
1zsqA	528	73.26	b.55.1.8,c.45.1.3	125616,125617
1vhqA	232	78.68	c.23.16.2	100696
1rxdA	159	79.54	c.45.1.1	111959
2z0jA	237	79.99		
2e0tA	151	81.01		
2f4dA	184	83.45		
1d2mA	665	85.33	c.37.1.19,c.37.1.19	32417,32418
2yzrA	330	85.43		
1ydgA	211	85.46	c.23.5.8	116614
1qhfA	240	86.01	c.60.1.1	33960
2csuA	457	86.29	c.2.1.8,c.23.4.1,c.23.4.1	130781,130782,130783
2p6xA	309	88.31