# List of top-scoring protein chains for t06-w0.5-1-bys-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1rhs	296	1.62e-13		
2hhgA	139	1.71e-13		
1e0cA	271	5.16e-13	c.46.1.2,c.46.1.2	32717,32718
1yt8A	539	6.96e-13	c.46.1.2,c.46.1.2,c.46.1.2,c.46.1.2	123996,123997,123998,123999
1rhsA	296	1.08e-12	c.46.1.2,c.46.1.2	32703,32704
1qb0A	211	1.62e-12	c.46.1.1	32699
1gmxA	108	3.16e-12	c.46.1.3	65355
1whbA	157	4.21e-12	c.46.1.4	114639
1t3kA	152	1.19e-11	c.46.1.1	106357
2fsxA	148	1.49e-11		
2a2kA	175	2.15e-11		
2j6pA	152	3.32e-11		
1ymkA	175	7.27e-11	c.46.1.1	123699
2gwfA	157	1.70e-10	c.46.1.4	135802
1uarA	285	1.76e-10	c.46.1.2,c.46.1.2	107762,107763
2eg4A	230	2.05e-10		
1okgA	373	4.83e-10	c.46.1.2,c.46.1.2,d.26.1.3	93250,93251,93252
2oucA	142	8.60e-10		
1wv9A	94	1.15e-08		
2f46A	156	0.6672		
1c4oA	664	1.624	c.37.1.19,c.37.1.19	32415,32416
2i6jA	161	3.385		
1yn9A	169	4.686		
1i9sA	210	6.818	c.45.1.1	62099
1bf6A	291	7.867	c.1.9.3	29065
1oheA	348	10.30	c.45.1.1,c.45.1.1	87013,87014
2hcrA	326	13.17		
2b4uA	335	13.51		
1fpzA	212	14.22	c.45.1.1	59976
1yz4A	160	14.57		
1ekjA	221	14.84	c.53.2.1	33364
1oywA	523	17.28	a.4.5.43,c.37.1.19,c.37.1.19	93760,93761,93762
2hxpA	155	17.52		
2c46A	241	18.94		
1zzwA	149	19.27		
1d5rA	324	19.81	b.7.1.1,c.45.1.1	23181,32697
2j4jA	226	20.07		
1ywfA	296	21.05	c.45.1.5	124144
2eplX	627	22.36		
1yksA	440	24.35	c.37.1.14,c.37.1.14	123561,123562
2esbA	188	24.62		
2imgA	151	24.88		
1dkuA	317	25.42	c.61.1.2,c.61.1.2	34118,34119
2j16A	182	27.00		
1wrmA	165	29.43		
1z6bA	154	31.61	d.38.1.6	124510
3cwvA	369	32.69		
2v1xA	591	36.60		
2iw0A	254	36.79	c.6.2.3	137737
2p4dA	172	37.51		
2hcmA	164	38.68		
1d2mA	665	39.66	c.37.1.19,c.37.1.19	32417,32418
1vhrA	184	39.69	c.45.1.1	32651
1vi2A	300	42.13	c.2.1.7,c.58.1.5	100726,100727
2r0bA	154	42.54		
2nt2A	145	43.51		
1zsqA	528	43.70	b.55.1.8,c.45.1.3	125616,125617
1uqwA	509	44.53	c.94.1.1	99799
1u24A	337	46.12	c.45.1.4	112968
2c71A	216	48.14	c.6.2.3	130017
2z6rA	265	48.97		
1r26A	125	48.99	c.47.1.1	96847
2f4dA	184	49.13		
2o8nA	265	49.33		
2e0tA	151	50.65		
1k92A	455	52.08	c.26.2.1,d.210.1.1	68325,68326
2vq3A	215	54.05		
2gllA	171	55.24		
2c1iA	431	56.88	c.6.2.3,d.341.1.1	129636,129637
1rxdA	159	57.45	c.45.1.1	111959
2b4pA	334	63.37		
2csuA	457	63.92	c.2.1.8,c.23.4.1,c.23.4.1	130781,130782,130783
1vl2A	421	64.92	c.26.2.1,d.210.1.1	108708,108709
1kpgA	287	66.34	c.66.1.18	68735
2e7uA	424	67.45		
1ydgA	211	68.49	c.23.5.8	116614
1jztA	246	71.00	c.104.1.1	63319
1vhoA	346	72.56	b.49.3.1,c.56.5.4	100694,100695
1qhfA	240	80.05	c.60.1.1	33960
1vhqA	232	80.33	c.23.16.2	100696
2yzrA	330	81.77		
2cc0A	195	82.07	c.6.2.3	130209
2fafA	608	82.94		
1zupA	315	83.79	c.55.3.11	125681
3cggA	195	85.12		
2gxaA	274	89.06