# List of top-scoring protein chains for t06-w0.5-1-CB_burial_14_7-0.3-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2hhgA	139	5.89e-13		
1rhs	296	1.85e-12		
1qb0A	211	3.39e-12	c.46.1.1	32699
1e0cA	271	5.20e-12	c.46.1.2,c.46.1.2	32717,32718
1whbA	157	5.83e-12	c.46.1.4	114639
1rhsA	296	7.74e-12	c.46.1.2,c.46.1.2	32703,32704
1gmxA	108	1.42e-11	c.46.1.3	65355
2a2kA	175	4.45e-11		
2fsxA	148	5.38e-11		
1t3kA	152	7.69e-11	c.46.1.1	106357
2j6pA	152	7.98e-11		
1uarA	285	1.30e-10	c.46.1.2,c.46.1.2	107762,107763
1yt8A	539	2.00e-10	c.46.1.2,c.46.1.2,c.46.1.2,c.46.1.2	123996,123997,123998,123999
1ymkA	175	2.82e-10	c.46.1.1	123699
2gwfA	157	3.32e-10	c.46.1.4	135802
2oucA	142	3.38e-09		
1okgA	373	9.99e-09	c.46.1.2,c.46.1.2,d.26.1.3	93250,93251,93252
2eg4A	230	1.02e-08		
1wv9A	94	4.82e-07		
2f46A	156	1.941		
2hcrA	326	3.201		
1i9sA	210	10.61	c.45.1.1	62099
1oheA	348	11.34	c.45.1.1,c.45.1.1	87013,87014
1dkuA	317	13.54	c.61.1.2,c.61.1.2	34118,34119
1yn9A	169	14.53		
1u9yA	284	15.12	c.61.1.2,c.61.1.2	119655,119656
1u24A	337	18.37	c.45.1.4	112968
1d5rA	324	18.47	b.7.1.1,c.45.1.1	23181,32697
1ecfA	504	25.26	c.61.1.1,d.153.1.1	34053,41820
1bf6A	291	26.26	c.1.9.3	29065
2i6jA	161	27.12		
1musA	477	28.00	c.55.3.4	79494
2fafA	608	30.82		
1fpzA	212	32.92	c.45.1.1	59976
1fsgA	233	37.66	c.61.1.1	34029
2yzkA	178	37.99		
2c46A	241	38.42		
1kpgA	287	38.78	c.66.1.18	68735
2gcgA	330	39.95		
1cjbA	231	41.16	c.61.1.1	34079
2esbA	188	41.75		
2imgA	151	42.43		
2az4A	429	46.41	d.157.1.10	127597
2r0bA	154	48.72		
2b4pA	334	48.75		
2nyvA	222	49.50		
2douA	376	50.53		
2b4uA	335	52.18		
3clkA	290	53.57		
1j7xA	302	57.57	c.14.1.2	66425
2hcmA	164	57.84		
2hxpA	155	61.99		
2z6rA	265	64.98		
1uwcA	261	68.53	c.69.1.17	100101
1jztA	246	69.62	c.104.1.1	63319
2gebA	185	70.68		
2p4dA	172	70.75		
1jyeA	349	71.35	c.93.1.1	67455
1c9kA	180	72.28	c.37.1.11	32363
3bblA	287	74.66		
1zs9A	261	75.99	c.108.1.22	125600
2v8oA	444	76.02		
1pswA	348	77.43	c.87.1.7	88287
1j5xA	342	77.67	c.80.1.1	71591
1ydgA	211	79.53	c.23.5.8	116614
2pq6A	482	80.38		
1khbA	625	81.34	c.91.1.1,c.109.1.1	68606,68607
1hzdA	272	81.35	c.14.1.3	65969
1vl2A	421	83.94	c.26.2.1,d.210.1.1	108708,108709
2nt2A	145	84.27		
2vq3A	215	84.33		
1pwhA	327	89.66	c.79.1.1	95224