# List of top-scoring protein chains for t06-w0.5-1-CB8-sep9-0.3-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1rhs	296	2.02e-11		
2hhgA	139	4.84e-11		
1rhsA	296	8.45e-11	c.46.1.2,c.46.1.2	32703,32704
1e0cA	271	1.06e-10	c.46.1.2,c.46.1.2	32717,32718
1whbA	157	1.57e-10	c.46.1.4	114639
1qb0A	211	1.59e-10	c.46.1.1	32699
1yt8A	539	2.70e-10	c.46.1.2,c.46.1.2,c.46.1.2,c.46.1.2	123996,123997,123998,123999
1gmxA	108	5.84e-10	c.46.1.3	65355
1uarA	285	7.50e-10	c.46.1.2,c.46.1.2	107762,107763
2j6pA	152	9.16e-10		
1t3kA	152	9.44e-10	c.46.1.1	106357
2a2kA	175	1.76e-09		
2fsxA	148	3.15e-09		
2gwfA	157	5.76e-09	c.46.1.4	135802
1ymkA	175	6.19e-09	c.46.1.1	123699
2eg4A	230	1.39e-08		
1okgA	373	2.80e-08	c.46.1.2,c.46.1.2,d.26.1.3	93250,93251,93252
2oucA	142	5.76e-08		
1wv9A	94	7.67e-07		
2f46A	156	1.111		
2i6jA	161	5.703		
1oheA	348	6.448	c.45.1.1,c.45.1.1	87013,87014
2b4uA	335	9.052		
1yn9A	169	9.150		
1musA	477	11.19	c.55.3.4	79494
1fpzA	212	13.34	c.45.1.1	59976
1d5rA	324	14.05	b.7.1.1,c.45.1.1	23181,32697
2r0bA	154	17.06		
2imgA	151	20.10		
1bf6A	291	22.66	c.1.9.3	29065
2esbA	188	23.62		
2hcmA	164	24.18		
2hxpA	155	25.39		
2hcrA	326	26.95		
1i9sA	210	27.15	c.45.1.1	62099
1zzwA	149	27.37		
1rxdA	159	29.00	c.45.1.1	111959
2gcgA	330	29.06		
1c4oA	664	29.27	c.37.1.19,c.37.1.19	32415,32416
2eplX	627	30.67		
1vhrA	184	30.92	c.45.1.1	32651
2p4dA	172	33.94		
1ir6A	424	34.70	c.107.1.2	71342
1yirA	408	35.65	c.1.17.2,d.41.2.2	123330,123331
1dkuA	317	36.57	c.61.1.2,c.61.1.2	34118,34119
1wrmA	165	38.42		
2c46A	241	38.88		
2b4pA	334	40.79		
1yz4A	160	41.03		
2nt2A	145	43.82		
1reqB	637	45.62	c.1.19.1,c.23.6.1	29621,31248
1oywA	523	47.74	a.4.5.43,c.37.1.19,c.37.1.19	93760,93761,93762
2j16A	182	48.24		
1yhtA	367	51.02	c.1.8.6	123213
1u24A	337	53.81	c.45.1.4	112968
2f4dA	184	53.81		
2px6A	316	56.58		
1u9yA	284	58.08	c.61.1.2,c.61.1.2	119655,119656
2dbqA	334	60.55		
1cexA	214	61.61	c.69.1.30	31285
1ydgA	211	62.42	c.23.5.8	116614
1ekjA	221	62.58	c.53.2.1	33364
2nyvA	222	62.94		
2p6xA	309	63.71		
1tib	269	65.23		
1xcbA	211	65.75	a.4.5.38,c.2.1.12	109552,109553
3cvjA	243	66.11		
2czqA	205	67.34		
1zc0A	309	68.64		
2fh7A	595	69.25		
4pgaA	337	69.76	c.88.1.1	35565
2g1pA	278	71.14		
2hc1A	291	71.70		
3bchA	253	72.97		
1zsqA	528	79.23	b.55.1.8,c.45.1.3	125616,125617
1nnsA	326	79.53	c.88.1.1	85910
1z15A	344	83.33		
1ywfA	296	85.75	c.45.1.5	124144
1c9kA	180	88.76	c.37.1.11	32363
1vhoA	346	89.59	b.49.3.1,c.56.5.4	100694,100695
3tglA	269	89.70	c.69.1.17	34733