# List of top-scoring protein chains for t06-80-60-80-str2+near-backbone-11-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2hhgA 139 1.12e-11 1gmxA 108 4.70e-10 c.46.1.3 65355 1rhs 296 5.08e-10 1e0cA 271 1.20e-09 c.46.1.2,c.46.1.2 32717,32718 1rhsA 296 1.25e-09 c.46.1.2,c.46.1.2 32703,32704 1yt8A 539 2.47e-09 c.46.1.2,c.46.1.2,c.46.1.2,c.46.1.2 123996,123997,123998,123999 1uarA 285 9.37e-09 c.46.1.2,c.46.1.2 107762,107763 1qb0A 211 1.59e-08 c.46.1.1 32699 1whbA 157 2.37e-08 c.46.1.4 114639 2a2kA 175 2.82e-08 1ymkA 175 6.93e-08 c.46.1.1 123699 2gwfA 157 9.37e-08 c.46.1.4 135802 2j6pA 152 9.77e-08 2fsxA 148 2.37e-07 2oucA 142 1.11e-06 2eg4A 230 1.20e-06 1okgA 373 2.18e-06 c.46.1.2,c.46.1.2,d.26.1.3 93250,93251,93252 1t3kA 152 2.26e-06 c.46.1.1 106357 1wv9A 94 5.50e-05 1ygyA 529 1.467 c.2.1.4,c.23.12.1,d.58.18.1,d.81.2.2 123150,123151,123152,123153 1i9sA 210 1.946 c.45.1.1 62099 2f46A 156 2.845 2fbyA 205 2.977 2e6mA 208 3.140 1xrsB 262 3.544 c.23.6.1,d.230.4.1 115884,115885 2dbqA 334 4.706 2e55A 208 7.119 2c46A 241 7.886 2o7iA 592 8.303 1im5A 180 8.615 c.33.1.3 66211 3cvjA 243 9.816 1oheA 348 10.45 c.45.1.1,c.45.1.1 87013,87014 2vq3A 215 10.63 2v1xA 591 11.51 1bd3A 243 13.13 c.61.1.1 34098 2o8nA 265 13.83 2b4uA 335 14.42 1gdhA 320 14.43 c.2.1.4,c.23.12.1 30095,31355 1fmjA 351 15.63 c.37.1.5 59879 1sc6A 404 16.04 c.2.1.4,c.23.12.1,d.58.18.1 118932,118933,118934 2drvA 200 17.71 2bl0B 145 17.95 1pswA 348 18.31 c.87.1.7 88287 1w5fA 353 19.48 c.32.1.1,d.79.2.1 114247,114248 1j2rA 199 22.21 c.33.1.3 90788 1w5qA 337 22.57 1yn9A 169 22.60 1xcbA 211 23.43 a.4.5.38,c.2.1.12 109552,109553 1u24A 337 23.66 c.45.1.4 112968 1t6t1 118 24.86 1l6sA 323 26.59 c.1.10.3 73627 2it2A 200 26.64 1d5rA 324 26.96 b.7.1.1,c.45.1.1 23181,32697 2yyvA 227 27.76 1mx3A 347 28.39 c.2.1.4,c.23.12.1 79638,79639 2r3bA 310 28.89 1u9yA 284 28.91 c.61.1.2,c.61.1.2 119655,119656 1r6dA 337 29.66 c.2.1.2 97148 2qahA 303 30.36 2d0iA 333 30.47 2z1dA 372 30.56 2gzsA 278 32.58 2c71A 216 32.59 c.6.2.3 130017 1qb7A 236 33.03 c.61.1.1 34087 2a5hA 416 33.34 2dy0A 190 35.12 2cukA 311 35.68 2az4A 429 36.13 d.157.1.10 127597 2cc0A 195 36.17 c.6.2.3 130209 1zu0A 529 36.51 2j9iA 421 36.72 2g76A 335 37.60 1fpzA 212 37.65 c.45.1.1 59976 1y0pA 571 37.72 a.138.1.3,c.3.1.4,d.168.1.1 122507,122508,122509 1edzA 320 38.31 c.2.1.7,c.58.1.2 30287,33935 1vr0A 247 38.38 c.148.1.1 120428 1kq3A 376 38.88 e.22.1.2 68790 2nwrA 267 39.64 1wwkA 307 39.91 1x9gA 200 40.84 c.33.1.3 109527 1xg4A 295 42.51 2a0uA 383 43.02 1pjrA 724 43.91 c.37.1.19,c.37.1.19 32391,32392 2b82A 211 44.82 c.108.1.12 128057 2gcgA 330 45.79 1hdoA 206 45.87 c.2.1.2 60965 2p5tB 253 46.33 1nf9A 207 47.53 c.33.1.3 85631 2i5eA 211 47.82 2grvA 621 48.04 2oatA 439 49.70 c.67.1.4 34452 1pe1A 267 49.85 c.1.10.4 94591 1ybdA 239 50.50 c.73.1.3 122884 1h6kA 757 50.65 a.118.1.14,a.118.1.14,a.118.1.14 60675,60676,60677 1oneA 436 51.26 c.1.11.1,d.54.1.1 29200,38844 1p2hA 571 51.41 a.138.1.3,c.3.1.4,d.168.1.1 93930,93931,93932 1f8rA 498 52.23 c.3.1.2,d.16.1.5 30410,37974 2q4eA 362 55.33 2bo1A 101 56.55 2hp1A 432 57.41 1yacA 208 57.42 c.33.1.3 31757 1m3uA 264 58.46 c.1.12.8 84784 3b2yA 275 59.59 2uz0A 263 59.82 2epgA 487 60.29 2h0rA 216 60.34 1xzwA 426 60.81 b.1.12.1,d.159.1.1 116270,116271 1qo8A 566 62.22 a.138.1.3,c.3.1.4,d.168.1.1 19696,30433,42316 1dpeA 507 62.26 c.94.1.1 35799 1lc0A 294 62.35 c.2.1.3,d.81.1.4 73823,73824 2brxA 244 64.79 c.73.1.3 129028 1zhaA 267 65.18 1v8bA 479 66.84 c.2.1.4,c.23.12.3 113564,113565 2atmA 331 67.17 1tljA 213 67.31 d.282.1.1 107126 2ehjA 208 67.79 2ho3A 325 68.09 2cxnA 557 68.37 1r1mA 164 68.41 d.79.7.1 96820 2pi1A 334 69.38 1ta9A 450 69.42 1z7bA 358 69.52 c.2.1.2 124599 2hcfA 234 70.62 c.108.1.6 136333 1j4aA 333 70.62 c.2.1.4,c.23.12.1 71502,71503 1vquA 374 70.67 1jk7A 323 72.42 d.159.1.3 63144 2z0jA 237 72.43 1oapA 109 72.48 d.79.7.1 92706 2hqsC 118 72.49 d.79.7.1 136666 1jbeA 128 73.53 c.23.1.1 62845 2gv8A 447 74.33 c.3.1.5,c.3.1.5 135759,135760 1gnlA 544 74.90 e.26.1.1 70287 2z3yA 662 75.18 1yt3A 375 75.29 a.60.8.3,a.60.8.3,c.55.3.5 123992,123993,123994 1o60A 292 75.70 c.1.10.4 92532 2dvzA 314 76.12 1vr5A 547 76.63 c.94.1.1 120437 2d4qA 257 76.89 3bc9A 599 77.33 2qg3A 208 79.02 1g8kA 825 79.06 b.52.2.2,c.81.1.1 26920,35328 1zn8A 180 79.06 c.61.1.1 125376 2a67A 167 81.02 2p5yA 311 81.42 1t8tA 271 81.84 c.37.1.5 106685 1dceB 331 83.34 a.102.4.3 18872 2oycA 306 84.51 2f6kA 307 85.94 c.1.9.15 133047 2cftA 298 86.00 1nriA 306 86.57 c.80.1.3 86123 2kfnA 605 86.64 c.55.3.5,e.8.1.1 33682,42975 2hxpA 155 86.75 1g2qA 187 86.75 c.61.1.1 65117 1rmwA 212 87.39 2rgxA 206 88.03 2j0fA 482 88.98