# List of top-scoring protein chains for T0411.t04-w0.5 hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1uarA	285	3.53e-10	c.46.1.2,c.46.1.2	107762,107763
1urhA	280	1.07e-09	c.46.1.2,c.46.1.2	99829,99830
1rhsA	296	1.65e-09	c.46.1.2,c.46.1.2	32703,32704
1dp2A	293	1.67e-09	c.46.1.2,c.46.1.2	32705,32706
1rhdA	293	1.70e-09	c.46.1.2,c.46.1.2	32715,32716
1e0cA	271	8.70e-09	c.46.1.2,c.46.1.2	32717,32718
2hhgA	139	3.38e-08		
2eg4A	230	1.77e-07		
1tq1A	129	2.79e-07	c.46.1.3	107198
1gmxA	108	4.02e-07	c.46.1.3	65355
1qxnA	137	5.92e-07	c.46.1.3	96537
2k0zA	110	5.13e-05		
1yt8A	539	6.64e-05	c.46.1.2,c.46.1.2,c.46.1.2,c.46.1.2	123996,123997,123998,123999
1c25A	161	0.000472	c.46.1.1	32698
2ifdA	175	0.000553		
1okgA	373	0.000561	c.46.1.2,c.46.1.2,d.26.1.3	93250,93251,93252
1ymkA	175	0.000639	c.46.1.1	123699
1cwtA	178	0.000640	c.46.1.1	32702
1qb0A	211	0.000676	c.46.1.1	32699
2a2kA	175	0.000779		
2ifvA	175	0.001111		
2fsxA	148	0.001834		
1hzmA	154	0.008416	c.46.1.1	65975
1wv9A	94	0.009066		
2j6pA	152	0.02779		
1t3kA	152	0.08727	c.46.1.1	106357
2oucA	142	0.2383		
1veeA	134	1.077		
1wqaA	455	7.959		
1i2oA	316	11.08	c.1.10.1	61574
2gwfA	157	16.05	c.46.1.4	135802
1whbA	157	19.90	c.46.1.4	114639
1x31B	404	21.57		
2fdrA	229	26.57	c.108.1.6	133319
3brqA	296	36.49		
2gagB	405	41.13		
2j13A	247	53.16	c.6.2.3	137934
2dxnA	274	54.82		
1vi6A	208	58.04	c.23.15.1	100736
3busA	273	58.26		
2yxeA	215	66.35		
2eihA	343	75.43		
1ny1A	240	78.26	c.6.2.3	86395
1i2rA	316	80.76	c.1.10.1	61580
1i2pA	316	80.86	c.1.10.1	61576
1w1b1	257	82.04		
1w17A	263	82.59	c.6.2.3	120573
1ucwA	317	83.12	c.1.10.1	29171
1onrA	316	83.14	c.1.10.1	29169
1i2nA	316	83.69	c.1.10.1	61572
1i2qA	316	86.74	c.1.10.1	61578
1bt3A	345	87.09	a.86.1.2	18507