# List of top-scoring protein chains for t04-w0.5-1-str4-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2hhgA 139 5.70e-13 1e0cA 271 7.48e-13 c.46.1.2,c.46.1.2 32717,32718 1rhsA 296 8.72e-13 c.46.1.2,c.46.1.2 32703,32704 1rhs 296 1.67e-12 1yt8A 539 1.12e-11 c.46.1.2,c.46.1.2,c.46.1.2,c.46.1.2 123996,123997,123998,123999 1gmxA 108 1.77e-11 c.46.1.3 65355 1uarA 285 2.32e-11 c.46.1.2,c.46.1.2 107762,107763 1qb0A 211 4.69e-11 c.46.1.1 32699 1c25 161 8.52e-11 2fsxA 148 9.45e-11 1t3kA 152 1.03e-10 c.46.1.1 106357 1ymkA 175 2.78e-10 c.46.1.1 123699 1okgA 373 3.10e-10 c.46.1.2,c.46.1.2,d.26.1.3 93250,93251,93252 2a2kA 175 4.02e-10 1whbA 157 4.67e-10 c.46.1.4 114639 2eg4A 230 7.15e-10 2j6pA 152 3.17e-09 2gwfA 157 9.20e-09 c.46.1.4 135802 1wv9A 94 2.56e-08 2oucA 142 7.15e-08 2f46A 156 3.308 1yn9A 169 4.889 2c5sA 413 4.981 c.26.2.6,d.308.1.1 129950,129951 2c3zA 222 5.822 1yz4A 160 8.566 1x24A 180 9.460 1ywfA 296 14.24 c.45.1.5 124144 2cybA 323 14.70 2dbqA 334 14.90 2b4pA 334 16.30 2i6jA 161 16.68 1zclA 180 16.94 2hxpA 155 17.22 1wrmA 165 19.75 2a9fA 398 20.71 1rxdA 159 21.39 c.45.1.1 111959 2b4uA 335 21.45 1oywA 523 21.74 a.4.5.43,c.37.1.19,c.37.1.19 93760,93761,93762 1i9sA 210 22.32 c.45.1.1 62099 1tf5A 844 22.79 a.162.1.1,a.172.1.1,c.37.1.19,c.37.1.19 106834,106835,106836,106837 2r0bA 154 22.79 1eudB 396 23.37 c.23.4.1,d.142.1.4 31150,41571 1vhoA 346 24.31 b.49.3.1,c.56.5.4 100694,100695 1vl2A 421 24.60 c.26.2.1,d.210.1.1 108708,108709 1i9gA 280 28.82 c.66.1.13 62090 2p4dA 172 29.22 1y0eA 223 29.33 c.1.2.5 116297 3b5vA 248 30.48 2c46A 241 33.25 2nu8B 388 33.40 1psdA 409 34.18 c.2.1.4,c.23.12.1,d.58.18.1 30097,31357,39354 2hmaA 376 36.68 2imgA 151 36.90 2cftA 298 38.52 2nt2A 145 38.82 2d13A 227 42.60 c.26.2.1 131121 1yloA 348 44.03 b.49.3.1,c.56.5.4 123659,123660 1k92A 455 44.24 c.26.2.1,d.210.1.1 68325,68326 2q1sA 377 46.34 1t5iA 172 46.83 c.37.1.19 106450 2fshA 853 47.32 1npyA 271 47.70 c.2.1.7,c.58.1.5 85995,85996 2fh7A 595 47.74 1vhrA 184 47.98 c.45.1.1 32651 2j16A 182 48.13 2e18A 257 48.98 1zckA 154 49.15 3brqA 296 49.44 2z0jA 237 49.49 2p4gA 270 51.52 1d5rA 324 51.53 b.7.1.1,c.45.1.1 23181,32697 2dm6A 333 53.85 b.35.1.2,c.2.1.1 131567,131568 1igs 248 53.99 1qorA 327 55.26 b.35.1.2,c.2.1.1 24766,29782 1ep3A 311 56.95 c.1.4.1 28597 2e0tA 151 58.87 2yxeA 215 59.32 1yb5A 351 59.37 b.35.1.2,c.2.1.1 116601,116602 1f8fA 371 60.58 b.35.1.2,c.2.1.1 83246,83247 1or8A 340 61.42 c.66.1.6 93451 2b69A 343 61.53 c.2.1.2 127974 1xcbA 211 63.63 a.4.5.38,c.2.1.12 109552,109553 2pt7A 330 64.20 1oheA 348 65.20 c.45.1.1,c.45.1.1 87013,87014 2h1rA 299 66.59 2f4dA 184 66.72 4ts1A 319 67.35 c.26.1.1 31565 1zzwA 149 68.53 2c5aA 379 69.15 c.2.1.2 129894 2hcmA 164 69.31 1i2cA 404 69.61 c.2.1.2 83666 2eihA 343 70.20 2dekA 265 70.39 c.90.1.1 131430 2esbA 188 71.16 1wlyA 333 72.62 1p15A 253 72.74 c.45.1.2 93894 2a0nA 265 74.61 c.1.2.1 125961 1qo2A 241 76.22 c.1.2.1 28533 1im8A 244 77.77 c.66.1.14 66212 1tlfA 301 81.43 c.93.1.1 35687 1rkxA 357 81.91 c.2.1.2 97631 1dxy 333 82.65 1sur 215 83.33 1ufyA 122 86.33 d.79.1.2 88489