# List of top-scoring protein chains for t04-w0.5-1-pb-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1rhsA 296 1.08e-15 c.46.1.2,c.46.1.2 32703,32704 2hhgA 139 1.42e-15 1e0cA 271 1.89e-15 c.46.1.2,c.46.1.2 32717,32718 1rhs 296 1.99e-15 1yt8A 539 6.54e-14 c.46.1.2,c.46.1.2,c.46.1.2,c.46.1.2 123996,123997,123998,123999 1gmxA 108 1.43e-13 c.46.1.3 65355 1uarA 285 2.05e-13 c.46.1.2,c.46.1.2 107762,107763 1qb0A 211 8.20e-13 c.46.1.1 32699 2fsxA 148 9.64e-13 1c25 161 1.71e-12 1okgA 373 2.31e-12 c.46.1.2,c.46.1.2,d.26.1.3 93250,93251,93252 1ymkA 175 4.03e-12 c.46.1.1 123699 2eg4A 230 4.91e-12 2a2kA 175 6.78e-12 1t3kA 152 7.04e-12 c.46.1.1 106357 1whbA 157 2.20e-11 c.46.1.4 114639 2j6pA 152 1.16e-10 1wv9A 94 3.44e-10 2gwfA 157 6.18e-10 c.46.1.4 135802 2oucA 142 1.55e-09 1yn9A 169 1.448 2c3zA 222 1.958 3b5vA 248 2.363 2f46A 156 2.792 1oywA 523 4.088 a.4.5.43,c.37.1.19,c.37.1.19 93760,93761,93762 1igs 248 4.214 1x24A 180 4.794 1y0eA 223 4.918 c.1.2.5 116297 1tf5A 844 4.946 a.162.1.1,a.172.1.1,c.37.1.19,c.37.1.19 106834,106835,106836,106837 2c5sA 413 5.673 c.26.2.6,d.308.1.1 129950,129951 2imgA 151 7.318 1a53 247 7.419 1yz4A 160 7.613 1zclA 180 7.993 2c46A 241 9.430 1npyA 271 10.56 c.2.1.7,c.58.1.5 85995,85996 1i9sA 210 11.40 c.45.1.1 62099 1ywfA 296 11.90 c.45.1.5 124144 2a9fA 398 12.47 2r0bA 154 12.56 1rxdA 159 14.57 c.45.1.1 111959 2i6jA 161 14.72 1a53A 247 15.71 c.1.2.4 28564 2cybA 323 17.22 1vhrA 184 17.26 c.45.1.1 32651 1eudB 396 17.48 c.23.4.1,d.142.1.4 31150,41571 2b4uA 335 17.87 2cftA 298 18.28 1t5iA 172 19.20 c.37.1.19 106450 2nu8B 388 19.28 2fh7A 595 20.14 2p4gA 270 21.52 2nt2A 145 21.64 1pwhA 327 24.21 c.79.1.1 95224 2dekA 265 24.68 c.90.1.1 131430 2q1sA 377 25.11 1r3sA 367 28.47 c.1.22.1 96963 1qorA 327 29.75 b.35.1.2,c.2.1.1 24766,29782 1oheA 348 30.06 c.45.1.1,c.45.1.1 87013,87014 1wlyA 333 30.91 1ep3A 311 31.28 c.1.4.1 28597 1jlnA 297 32.68 c.45.1.2 63172 1vl2A 421 33.11 c.26.2.1,d.210.1.1 108708,108709 1zckA 154 33.57 2e0tA 151 33.73 1wrmA 165 34.39 2bmaA 470 34.77 2f4dA 184 34.89 1y56A 493 35.31 2hxpA 155 36.22 1v7zA 260 38.17 c.125.1.1 100488 1f8fA 371 38.90 b.35.1.2,c.2.1.1 83246,83247 2bo1A 101 39.57 1gpjA 404 40.81 a.151.1.1,c.2.1.7,d.58.39.1 65451,65452,65453 2esbA 188 41.44 1i9gA 280 41.83 c.66.1.13 62090 2a0nA 265 42.20 c.1.2.1 125961 2b4pA 334 43.06 1i2cA 404 43.31 c.2.1.2 83666 2df8A 325 43.72 1thfD 253 44.09 c.1.2.1 28535 2dbqA 334 44.38 3cwvA 369 46.37 1zzwA 149 46.90 2p4dA 172 47.83 2hmaA 376 48.56 1a8y 367 49.81 2hcmA 164 49.87 2j16A 182 49.91 2pt7A 330 50.96 2b69A 343 52.10 c.2.1.2 127974 1oa8A 133 52.40 b.145.1.1 92698 2iw1A 374 52.67 c.87.1.8 137738 1k92A 455 53.55 c.26.2.1,d.210.1.1 68325,68326 1vhoA 346 53.78 b.49.3.1,c.56.5.4 100694,100695 1qo2A 241 54.61 c.1.2.1 28533 1h5yA 253 54.91 c.1.2.1 65638 2e18A 257 55.58 1aj2 282 57.02 1yloA 348 57.77 b.49.3.1,c.56.5.4 123659,123660 5nulA 138 58.30 c.23.5.1 31191 2d13A 227 58.77 c.26.2.1 131121 2e5fA 325 59.33 1yb5A 351 60.98 b.35.1.2,c.2.1.1 116601,116602 1tzjA 338 61.43 c.79.1.1 112868 1p15A 253 62.12 c.45.1.2 93894 1t8sA 484 62.84 c.56.2.1 106679 2eo5A 419 63.41 1d4xA 375 63.42 c.55.1.1,c.55.1.1 59107,59108 2gz1A 366 64.94 c.2.1.3,d.81.1.1 135887,135888 2eihA 343 64.94 1p77A 272 67.11 c.2.1.7,c.58.1.5 94214,94215 2qdxA 257 67.88 2dm6A 333 70.32 b.35.1.2,c.2.1.1 131567,131568 4ts1A 319 71.47 c.26.1.1 31565 2qr6A 393 72.45 1fpzA 212 73.38 c.45.1.1 59976 1v7cA 351 74.18 c.79.1.1 100446 2btfA 375 77.44 c.55.1.1,c.55.1.1 33429,33430 2h1rA 299 79.02 1jztA 246 79.91 c.104.1.1 63319 1psdA 409 80.94 c.2.1.4,c.23.12.1,d.58.18.1 30097,31357,39354 1qz5A 375 81.34 c.55.1.1,c.55.1.1 96614,96615 1uiuA 502 81.86 c.94.1.1 99434 2oycA 306 82.53 1e5xA 486 82.61 c.79.1.1 59283 2hrzA 342 82.80 1xcbA 211 83.62 a.4.5.38,c.2.1.12 109552,109553 1pii 452 84.89 2ohxA 374 85.83 b.35.1.2,c.2.1.1 24669,29685 1vi2A 300 87.41 c.2.1.7,c.58.1.5 100726,100727 1zlqA 502 87.41 c.94.1.1 125253 7taa 478 87.43 1vj0A 380 87.70 b.35.1.2,c.2.1.1 100786,100787 2f2sA 406 88.47