# List of top-scoring protein chains for t04-w0.5-1-o_notor2-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2hhgA	139	1.76e-13		
1rhsA	296	3.85e-13	c.46.1.2,c.46.1.2	32703,32704
1e0cA	271	3.96e-13	c.46.1.2,c.46.1.2	32717,32718
1rhs	296	4.63e-13		
1yt8A	539	5.94e-12	c.46.1.2,c.46.1.2,c.46.1.2,c.46.1.2	123996,123997,123998,123999
1gmxA	108	6.10e-12	c.46.1.3	65355
1uarA	285	2.34e-11	c.46.1.2,c.46.1.2	107762,107763
2fsxA	148	2.90e-11		
1qb0A	211	2.92e-11	c.46.1.1	32699
1c25	161	5.24e-11		
1ymkA	175	6.35e-11	c.46.1.1	123699
2a2kA	175	1.48e-10		
1t3kA	152	1.53e-10	c.46.1.1	106357
1whbA	157	1.73e-10	c.46.1.4	114639
1okgA	373	1.79e-10	c.46.1.2,c.46.1.2,d.26.1.3	93250,93251,93252
2eg4A	230	6.59e-10		
2j6pA	152	5.56e-09		
2gwfA	157	7.60e-09	c.46.1.4	135802
1wv9A	94	1.58e-08		
2oucA	142	5.44e-08		
1yn9A	169	6.397		
2f46A	156	7.418		
1yz4A	160	9.016		
2c5sA	413	9.723	c.26.2.6,d.308.1.1	129950,129951
1ywfA	296	11.94	c.45.1.5	124144
2dbqA	334	12.91		
1x24A	180	14.88		
1zclA	180	15.13		
1rxdA	159	19.66	c.45.1.1	111959
1eudB	396	20.93	c.23.4.1,d.142.1.4	31150,41571
2cybA	323	22.69		
1ep3A	311	25.22	c.1.4.1	28597
1i9sA	210	26.54	c.45.1.1	62099
1vhrA	184	27.02	c.45.1.1	32651
1wrmA	165	27.06		
2b4uA	335	27.99		
1npyA	271	28.88	c.2.1.7,c.58.1.5	85995,85996
2c3zA	222	29.70		
2p4gA	270	31.59		
2r0bA	154	32.22		
2cftA	298	33.77		
1vhoA	346	33.87	b.49.3.1,c.56.5.4	100694,100695
1tf5A	844	35.85	a.162.1.1,a.172.1.1,c.37.1.19,c.37.1.19	106834,106835,106836,106837
2i6jA	161	36.70		
2p4dA	172	37.37		
2c46A	241	37.37		
2hxpA	155	38.18		
1y56A	493	40.82		
1d5rA	324	40.84	b.7.1.1,c.45.1.1	23181,32697
1y0eA	223	41.01	c.1.2.5	116297
1yloA	348	42.81	b.49.3.1,c.56.5.4	123659,123660
2imgA	151	43.36		
2b4pA	334	48.40		
1pwhA	327	50.26	c.79.1.1	95224
2fh7A	595	53.64		
1zckA	154	57.71		
2nu8B	388	63.40		
2j16A	182	63.80		
2e18A	257	65.14		
2bo1A	101	65.78		
1e5xA	486	66.35	c.79.1.1	59283
5nulA	138	68.63	c.23.5.1	31191
1fpzA	212	68.77	c.45.1.1	59976
1zzwA	149	69.49		
1i0dA	332	69.94	c.1.9.3	61487
1f8fA	371	69.98	b.35.1.2,c.2.1.1	83246,83247
1sur	215	70.63		
1i2cA	404	70.82	c.2.1.2	83666
2d13A	227	70.90	c.26.2.1	131121
1oheA	348	71.77	c.45.1.1,c.45.1.1	87013,87014
2fshA	853	74.22		
1dorA	311	77.18	c.1.4.1	28595
2a9fA	398	78.31		
2q1sA	377	79.50		
1p15A	253	80.12	c.45.1.2	93894
1y0yA	353	80.41	b.49.3.1,c.56.5.4	122514,122515
1igs	248	80.63		
1oywA	523	81.50	a.4.5.43,c.37.1.19,c.37.1.19	93760,93761,93762
2esbA	188	84.71		
1tzjA	338	87.98	c.79.1.1	112868
2z0jA	237	88.88		
1fc6A	388	89.77	b.36.1.3,c.14.1.2	64738,64739
1v7cA	351	89.97	c.79.1.1	100446
1qorA	327	89.98	b.35.1.2,c.2.1.1	24766,29782